Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0454
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56470.1 68416.m06280 F-box family protein similar to F-box p... 31 0.72
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi... 26 0.73
At1g15950.1 68414.m01914 cinnamoyl-CoA reductase, putative nearl... 31 0.95
At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi... 25 2.1
At3g01700.1 68416.m00103 arabinogalactan-protein (AGP11) identic... 29 2.9
At1g68800.1 68414.m07865 TCP family transcription factor, putati... 28 5.0
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 28 6.7
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 28 6.7
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 28 6.7
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 28 6.7
At1g22420.1 68414.m02803 hydroxyproline-rich glycoprotein family... 27 8.8
>At3g56470.1 68416.m06280 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]
Length = 367
Score = 31.1 bits (67), Expect = 0.72
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = -3
Query: 219 RPWHLACMPAHTVRTGGWLCK-SSYDDEYAL--PSAVSGCESFF 97
+ WH AC+ + T WL S DD Y L PS C F
Sbjct: 57 KTWHEACVSLRVIHTSPWLIYFSKTDDSYELYDPSMQKNCNLHF 100
>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 424
Score = 26.2 bits (55), Expect(2) = 0.73
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 269 PLNSVEIYEESPTRTPGTSVTASKLLPLYRARGYYGPTPTDWEDQEY 409
P S + ++ R G+ T +LP + + P DW+D+EY
Sbjct: 187 PDASYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDREY 233
Score = 23.4 bits (48), Expect(2) = 0.73
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 383 PTDWEDQEYDLVAPHEASDSSY 448
P DW+++E L P + +S+Y
Sbjct: 260 PEDWDEEENGLWEPPKIPNSAY 281
>At1g15950.1 68414.m01914 cinnamoyl-CoA reductase, putative nearly
identical to CCR1 (GI:12034897), similar to cinnamoyl
CoA reductase GI:2058310 from [Eucalyptus gunnii]
Length = 344
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 165 LCKSSYDDEYALPSAVSGCESFFXXXXXXXXXXXXLIQP--EGQKFII 28
LCK+ D AL +A+ GC+ F +++P G KF+I
Sbjct: 64 LCKADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVI 111
>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 370
Score = 24.6 bits (51), Expect(2) = 2.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 296 ESPTRTPGTSVTASKLLPLYRARGYYGPTPTDWEDQEY 409
++ R G+ T +LP + + P DW+D+EY
Sbjct: 142 DNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDREY 179
Score = 23.4 bits (48), Expect(2) = 2.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 383 PTDWEDQEYDLVAPHEASDSSY 448
P DW+++E L P + +S+Y
Sbjct: 206 PEDWDEEENGLWEPPKIPNSAY 227
>At3g01700.1 68416.m00103 arabinogalactan-protein (AGP11) identical
to gi|10880499|gb|AAG24279
Length = 136
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 296 ESPTRTPGTSVTASKLLPLYRARGYYGPTPTDWEDQEYDLVAPHEASDSSYLPTAFAEPP 475
+SPT+ P + +S P + PTP D +Y +P SDS+ PT + PP
Sbjct: 34 KSPTKAPAAAPKSSAAAPKASSPVAEEPTPED----DYSAASP---SDSAEAPTV-SSPP 85
Query: 476 GPS 484
P+
Sbjct: 86 APT 88
>At1g68800.1 68414.m07865 TCP family transcription factor, putative
similar to cyc2 protein [Misopates orontium]; residues
80 to 140 nearly identical to cyc1a protein (nuclear
flower development gene cycloidea) GB:AAF07239
[Antirrhinum siculum]
Length = 317
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 303 RHERPERQLLLQSFCLFIAQEAIMDPHQRTGKIRNTIWLLLMK 431
R ER + LF E I DPHQ T +I+ T + L++
Sbjct: 201 RKRARERTMAKMKMRLFETSETISDPHQETREIKITNGVQLLE 243
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 311 TPGTSVTASKL-LPLYRARGY-YGPTPTDWEDQEYDLVAPHEASDSSYLPTAFAEPPGPS 484
+P +S AS+ P Y A Y Y P P+ + EY P S Y +++ PP S
Sbjct: 24 SPSSSSWASQQSYPQYGAESYNYPPPPSYAQPPEYTQPPPPLYSTQPYSAPSYSAPPSQS 83
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 311 TPGTSVTASKL-LPLYRARGY-YGPTPTDWEDQEYDLVAPHEASDSSYLPTAFAEPPGPS 484
+P +S AS+ P Y A Y Y P P+ + EY P S Y +++ PP S
Sbjct: 24 SPSSSSWASQQSYPQYGAESYNYPPPPSYAQPPEYTQPPPPLYSTQPYSAPSYSAPPSQS 83
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 311 TPGTSVTASKL-LPLYRARGY-YGPTPTDWEDQEYDLVAPHEASDSSYLPTAFAEPPGPS 484
+P +S AS+ P Y A Y Y P P+ + EY P S Y +++ PP S
Sbjct: 24 SPSSSSWASQQSYPQYGAESYNYPPPPSYAQPPEYTQPPPPLYSTQPYSAPSYSAPPSQS 83
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 311 TPGTSVTASKL-LPLYRARGY-YGPTPTDWEDQEYDLVAPHEASDSSYLPTAFAEPPGPS 484
+P +S AS+ P Y A Y Y P P+ + EY P S Y +++ PP S
Sbjct: 24 SPSSSSWASQQSYPQYGAESYNYPPPPSYAQPPEYTQPPPPLYSTQPYSAPSYSAPPSQS 83
>At1g22420.1 68414.m02803 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 480
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 476 PEVLRKLSVNMKNPMLHEEQPNRIPDLPSPLVWVHNSL 363
P+VL S++ NP + QP+ + + SPL W N L
Sbjct: 366 PQVLVTSSLDWPNPQ-NNLQPDNVLPVTSPLDWTPNQL 402
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,063,819
Number of Sequences: 28952
Number of extensions: 289163
Number of successful extensions: 830
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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