Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0453
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    27   3.1  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   3.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.0  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   5.3  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.1  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    25   9.3  

>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 291 PHLPRKLSL-RIGARPRDRNFTLLIQLQNGKPKALILEDKSGXSSN*KKMDRL 446
           PH  R  ++ +I    R R    L Q Q+GKP+  I + K+      +++DR+
Sbjct: 621 PHFKRTKTVEKIMDESRKRRSNQLEQTQDGKPELKIKKRKAEKGDQRQELDRI 673


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 407 ERXIIELKENGQAILNGASKGFPIIEKDVFAFRQQ 511
           ER I++ K  GQ+ LN        +EK+V  F+++
Sbjct: 182 EREILQNKNQGQSTLNSLKDRQQALEKEVNIFKER 216


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 173 ILALLRAYRPRSINPLDEVPSKLRAV 250
           I  +L +Y P+ INP +E+P   R +
Sbjct: 9   IYKVLYSYEPQEINPGEEIPENEREI 34


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 229 AV*APRCCWNGQHIFT 276
           A+  PRC W G+ +FT
Sbjct: 578 AIIKPRCLWTGKQVFT 593


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +3

Query: 234 LSSALLLERSTHLHVRRSPPHLPRKLSLRIGARPRDRNFTLLIQLQNGKPKALI 395
           L+ +LL+++ +     R    L R L+  I  +  DR+F++L+Q  + + K L+
Sbjct: 489 LAISLLIQKFSRKFDSRVSTELVRTLA-DISTKANDRDFSILVQFYSIQNKMLV 541


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 141 SSSCTPVISLTSWPFSEPTD 200
           S +C+P +  T WP ++P+D
Sbjct: 210 SYACSPGMLKTQWPSTQPSD 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,716
Number of Sequences: 5004
Number of extensions: 54927
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)