Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0453
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159... 38 0.005
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 30 1.4
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887... 29 4.2
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 28 5.5
02_04_0046 + 19211961-19212231,19212651-19212706,19212947-192130... 28 5.5
02_02_0663 - 12740733-12741104,12741260-12741326,12741709-127418... 28 5.5
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 28 5.5
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 28 7.3
03_05_0335 + 23259950-23259952,23260157-23260546,23263504-23263770 27 9.7
01_06_1086 - 34421837-34422311,34422426-34422612,34423162-344232... 27 9.7
>02_05_0167 -
26415319-26415494,26415591-26415840,26415909-26415974,
26416457-26416600,26416813-26416868,26416966-26417101,
26417190-26417277,26417379-26417482,26418515-26419180,
26419337-26419432,26419974-26420242,26420334-26420489,
26421153-26421192
Length = 748
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -1
Query: 175 DVREITGVQLLEEAPRCLSSKRRSGLN*AWSSEEVRKVGRRVDNAKFIQLSP 20
DV ++GV L EE + LS+ + +W+SEE RK+ + D F+Q P
Sbjct: 463 DVTAVSGVNLREEEEQLLSAPKEE----SWASEEARKIAQEEDGKLFLQKGP 510
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 143 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVV 253
++L +GDF L LL++Y P +I+ L + +KLR +
Sbjct: 426 RRLLAGDFTANLKLLQSYPPTNIDHLLHIANKLRGPI 462
>05_05_0114 -
22488172-22488279,22488414-22488511,22488616-22488784,
22489310-22489377,22490485-22490521,22490660-22490741,
22490845-22490903
Length = 206
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 80 AAPSSIKSAPSLAGEATWSFFKQLYSGDFPDILAL 184
A PSS+ S+ ++AG+ TW+ + +++ IL L
Sbjct: 32 APPSSVHSSYAVAGDLTWAILETIHAAIGHQILTL 66
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Frame = +2
Query: 161 DFPDILALLRAYRPRSINPLDEV----PSKLRAVVGTVNT----SSRSTVATSPSQETVA 316
+F D+ L + L+++ PS L V +V+T S++S+VATSP+Q TV+
Sbjct: 208 EFSDVEELYSTLPMEKVEALEDMVSLAPSSLVKGVASVSTTAVLSTKSSVATSPTQATVS 267
>02_04_0046 +
19211961-19212231,19212651-19212706,19212947-19213011,
19213138-19213212,19213305-19213383,19213591-19213629,
19213712-19213820,19214334-19214452,19215282-19215401,
19215846-19216232
Length = 439
Score = 28.3 bits (60), Expect = 5.5
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Frame = +2
Query: 62 DFANFFAAPSSIKSAPSL-----AGEATWSFFKQLYSGDFPDILALLRA---YRPRSINP 217
D+ NF +P S KSAPSL + T +K+L +L +R ++ S++
Sbjct: 299 DYENFTQSPMSDKSAPSLDILPGSARVTCKEYKRLVDNGERHLLLDVRPAHHFQIASVSQ 358
Query: 218 LDEVP-SKLRAVVGTVNTSSRSTVATSPSQETVATY 322
+P S+L + + TS + T S S + + Y
Sbjct: 359 SLNIPLSELEEKLQMLETSLKDTTDASSSDKPPSLY 394
>02_02_0663 -
12740733-12741104,12741260-12741326,12741709-12741809,
12741852-12742273,12743678-12743685,12745164-12745396
Length = 400
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 342 YHVVVRQYVATVSWEGEVATVE 277
YH V+ +A+ SW GE+A E
Sbjct: 379 YHPVIPNVIASCSWAGEIAVFE 400
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 143 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKL 241
K+L +GDF L LL+ Y P +I+ L V +KL
Sbjct: 242 KRLLAGDFTSNLKLLQNYPPTNISHLLYVANKL 274
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 143 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVVGT 259
++L +GDF + LL+ Y P +I+ L + ++LR V +
Sbjct: 448 RRLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRGSVAS 486
>03_05_0335 + 23259950-23259952,23260157-23260546,23263504-23263770
Length = 219
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +2
Query: 179 ALLRAYRPRSINPLDEVPSKLRAVVG--TVNTSSRSTVA--TSPSQETVA 316
A R+ RPR + P +P+K RAV T T + T+ +PS + VA
Sbjct: 29 AFFRSVRPRVVAPQKTLPTKKRAVPAPPTFKTMADKTLREFAAPSADNVA 78
>01_06_1086 -
34421837-34422311,34422426-34422612,34423162-34423291,
34423485-34423720,34423804-34423961,34424048-34424128,
34424216-34424281,34424364-34424432,34424722-34424866,
34425645-34426138,34426244-34426811,34429529-34429574
Length = 884
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 439 TGYSERSFQRIPDHRKGCVRFPSTSNRMVLAHCT 540
T E++ + PD ++ C PSTS + L T
Sbjct: 63 TDEQEKTLRSFPDGQRNCYTIPSTSGKKYLIRTT 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,267,147
Number of Sequences: 37544
Number of extensions: 362762
Number of successful extensions: 929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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