Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0453
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26224| Best HMM Match : VWD (HMM E-Value=0)                         40   0.002
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   31   0.80 
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   30   1.4  
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_29301| Best HMM Match : MFS_1 (HMM E-Value=2.9e-05)                 29   3.2  
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  29   4.3  
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)                     28   5.7  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   28   7.5  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           28   7.5  
SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)                 27   9.9  

>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
          Length = 736

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 253 WNGQHIFTFDGRHLTFPGNCRYVLAHD 333
           W  +H  TFDGRH+ F G C Y LA D
Sbjct: 219 WGQRHYRTFDGRHIDFIGKCSYTLAQD 245



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
 Frame = +1

Query: 265 HIFTFDGRHLTFPGNCRYVLAH------DHVIETSRC*SN 366
           H  +FDG+  TF G C+Y+L           I+T+ C SN
Sbjct: 576 HFVSFDGKAFTFGGKCQYLLTESLASGFSVTIDTAACSSN 615


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 265 HIFTFDGRHLTFPGNCRYVLAHD 333
           H  TFDGR  +F G C YV++ D
Sbjct: 33  HYKTFDGRLYSFQGGCNYVMSTD 55


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -2

Query: 642 SI*ARCTVSKTANYPSRTVTSMCTLKFRCAKTMNRTMSQHHSVAC*RKANTSFSMIG-NP 466
           S+ A+C      N   +   S C     C+K   R+  +HH   C  K ++  S +  + 
Sbjct: 3   SMDAKCEFCYATNVQLQKC-SRCKSTMYCSKDCPRSHWKHHKAICKAKKHSKDSKLDVST 61

Query: 465 LEAPFRIACPFSFNS 421
             AP R + P S NS
Sbjct: 62  TTAPLRFSQPMSKNS 76


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 27/88 (30%), Positives = 40/88 (45%)
 Frame = +2

Query: 62  DFANFFAAPSSIKSAPSLAGEATWSFFKQLYSGDFPDILALLRAYRPRSINPLDEVPSKL 241
           D+  +FAA  S +S P        S   +L +G+  D+L L+ A  P  +NP   + ++L
Sbjct: 339 DWQMWFAALESYESNPWFL-----SLLHKLLTGEH-DVLHLMGA-NPFPVNPPRYIRAQL 391

Query: 242 RAVVGTVNTSSRSTVATSPSQETVATYW 325
                T NTSS   V    S  T   +W
Sbjct: 392 FTYHYTQNTSSLGDVLLESSTNTSKAWW 419


>SB_29301| Best HMM Match : MFS_1 (HMM E-Value=2.9e-05)
          Length = 662

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = +1

Query: 406 RAXYHRIERKWTGYSERSFQRIPDHR-----KGCVRFPSTSNRMVLAHCT-VHGLCTSK 564
           R  Y R++ ++  YS  S +R+P  +     K     P  + +MV  H T +HG+ T++
Sbjct: 595 RVYYRRMDNRYQQYSANSRRRVPTAKSLPSFKFLEELPLANTKMVSNHTTSMHGVLTNE 653


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 453 TELPKDSRSSKRMCSLSVNKQQNGVGSLYGSWSL 554
           TELP D  SS  M ++ V+  QN   +  GSWS+
Sbjct: 198 TELPLDQASSISMSTMEVSAGQNVEFADGGSWSM 231


>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1230

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 633 ARCTVSKTANYPSRTVTSMCTLKFRCAKTMNRTMSQHHSV 514
           A CT + TA+  + T T+ CT K  CA   +   + HH++
Sbjct: 188 AHCTTTSTAHCTA-TSTAHCTAKIYCALYHDIYRALHHNI 226


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
 Frame = +1

Query: 265  HIFTFDGRHLTFPG----NCRYVLAHD 333
            H+ TFD  +  FPG     C YVLA D
Sbjct: 1651 HVSTFDSLYYRFPGYNKPECTYVLARD 1677


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 453 TELPKDSRSSKRMCSLSVNKQQNGVGSLYGSWSLHI*T*VCTLK*RFYLGNSRFSRRYNE 632
           T  P D + S+RMC  ++   Q G    +G+W   I    C  + R    +S  + +Y E
Sbjct: 554 TACPADKKESRRMCKCNLVTCQVGE---WGTWQGDISADSCGTQTRSKAVSSTHAHKYQE 610

Query: 633 LRC 641
             C
Sbjct: 611 NTC 613


>SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1054

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 131 WSFFKQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVVG-TVNTSSRSTVATSPSQE 307
           W+ +KQL   DF D LALL ++  + +     + +   A +G  +N        T+ S E
Sbjct: 793 WTLWKQLDDLDFADDLALL-SHTQQQMQEKTNIVADNSARLGLNINRGKSKVFKTNASNE 851

Query: 308 TVAT 319
           T  T
Sbjct: 852 TPIT 855


>SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)
          Length = 421

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 131 WSFFKQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVVG-TVNTSSRSTVATSPSQE 307
           W+ +KQL   DF D LALL ++  + +     + +   A +G  +N        T+ S E
Sbjct: 149 WTLWKQLDDLDFADDLALL-SHTQQQMQEKTNIVADNSARLGLNINRGKSKVFKTNASNE 207

Query: 308 TVAT 319
           T  T
Sbjct: 208 TPIT 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,897,390
Number of Sequences: 59808
Number of extensions: 419242
Number of successful extensions: 1154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)