Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0453
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22179-14|CAI06052.1|  443|Caenorhabditis elegans Hypothetical p...    31   0.92 
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    29   2.8  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    29   2.8  
AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math ...    28   6.5  

>Z22179-14|CAI06052.1|  443|Caenorhabditis elegans Hypothetical
           protein F58A4.14 protein.
          Length = 443

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 286 RHLTFPGNCRYVLA-HDHVIETSRC*SNFKTENPRLLFWKIRAXYH 420
           R+    G C ++L  H   +E     S    +NP++ +W  RA YH
Sbjct: 124 RYFYETGRCNFLLGRHQIAVEQLTKASEVMKDNPKVWYWLARAIYH 169


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
           protein 1 protein.
          Length = 1852

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -1

Query: 553 KDHEPYNEPTPFCCLLTESEH----ILFDDRESFGSSVQNSLSIFFQFDDXPLLSSK 395
           K H    EPTP   L    E+    IL D R+  GSS Q SLS F  F    +  SK
Sbjct: 709 KAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSK 765


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
           C.elegans RNA polymeraseII largest subunit (ama-1 IV)
           gene, complete cds. ).
          Length = 1859

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -1

Query: 553 KDHEPYNEPTPFCCLLTESEH----ILFDDRESFGSSVQNSLSIFFQFDDXPLLSSK 395
           K H    EPTP   L    E+    IL D R+  GSS Q SLS F  F    +  SK
Sbjct: 709 KAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSK 765


>AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math
           domain containingprotein 47 protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +2

Query: 344 KLHAANPTSKRKTQGSYFGR*ERXIIELKENGQAILNGASKGFPIIEKDVFAFRQ--QAT 517
           +LH +   SK      +    +  +I   +NG   L   + G   IEK   + ++  Q  
Sbjct: 447 RLHVSLCCSKSNVTSEFRILADFELIIAGKNGGRPLKSKTNGCFNIEKTKNSSQELGQDV 506

Query: 518 EWCWLIVRFMVFAHLNLSVHIEVT 589
           EW  ++  +MV   L +  H+ +T
Sbjct: 507 EWSTIVYDYMVDGRLTVEAHVNIT 530


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,637,744
Number of Sequences: 27780
Number of extensions: 308322
Number of successful extensions: 831
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)