Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0453
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.63 
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   5.8  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   5.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.7  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 250 CWNGQHIFTFDGRHL 294
           CWN +H F + G ++
Sbjct: 332 CWNSEHFFEYGGNNI 346


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 225 KCRLSSALLLERSTHLHVRRSPPHLPRKL 311
           KC ++   +L+++  + V+++  HLPR +
Sbjct: 60  KCFMTKHGILDKNAEVDVQKALRHLPRSM 88


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +3

Query: 312 SLRIGARPRDRNFTLLIQLQNGKPKALILEDKSGXSSN*KKMDRLF*TELPKDS---RSS 482
           S  IG R ++R   L+  L+N K   +     +G  S+ + +D      + KDS    ++
Sbjct: 458 SQEIGDR-QERESELVPYLEN-KGNGVYAWIGAGRDSDSRLLDLCTKFLMHKDSLGLSTA 515

Query: 483 KRMCSLSVNKQQNGV 527
              CSL+V KQQN V
Sbjct: 516 TSTCSLAVAKQQNQV 530


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 47   INTTPDFANFFAAPSSIKSA 106
            +N  PD  N +A P+  KSA
Sbjct: 1467 LNHYPDLHNLYAVPTDKKSA 1486


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 453 TELPKDSRSSKRMCSLSVN 509
           T L  DSRS++RM + SVN
Sbjct: 272 TVLWLDSRSTERMIAASVN 290


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 638 SKLVVPSRKPRITQVEPLLQCA 573
           S L +P+  PRI    PLL CA
Sbjct: 44  SHLCLPA--PRINSKSPLLSCA 63


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 638 SKLVVPSRKPRITQVEPLLQCA 573
           S L +P+  PRI    PLL CA
Sbjct: 44  SHLCLPA--PRINSKSPLLSCA 63


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = -1

Query: 550 DHEPYNEPTPFCCLLTESEHILFDDRESFGSSVQNSLSIFFQFDDXPLLSS 398
           D  P  +PTP    L  +      D +   + +QN  S+  +F+    + S
Sbjct: 291 DLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVKIKFETLHTMDS 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,842
Number of Sequences: 438
Number of extensions: 3633
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)