Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0453
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05980.1 68418.m00662 dihydrofolate synthetase/folylpolygluta...    31   0.50 
At3g13670.1 68416.m01722 protein kinase family protein contains ...    29   3.5  
At4g32440.2 68417.m04618 agenet domain-containing protein contai...    28   6.1  
At4g32440.1 68417.m04617 agenet domain-containing protein contai...    28   6.1  
At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein lo...    28   6.1  
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    28   6.1  

>At5g05980.1 68418.m00662 dihydrofolate
           synthetase/folylpolyglutamate synthetase (DHFS/FPGS2)
           nearly identical to gi:17976705; identical to cDNA
           dihydrofolate synthetase/folylpolyglutamate synthetase
           (dhfs/fpgs2 gene) GI:17976704
          Length = 571

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
 Frame = +3

Query: 222 TKCRLSSALLLERST------HLHVRRSPPHLPRKLSLRI 323
           T CRLSSA L + S       H H +   PHLP  LS +I
Sbjct: 11  TSCRLSSAFLCQLSIPLTLRLHHHYQHHQPHLPSPLSFQI 50


>At3g13670.1 68416.m01722 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 703

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +1

Query: 256 NGQHIFTFDGRHLTFPGNCRYVLAHDHVIETSRC*SNFKTENPRLLFWKIRAXYHRIERK 435
           +GQH+  +D R   F G  RY  AH H+  T+    + ++    L+F       HR    
Sbjct: 302 SGQHV-EYDQRPDMFRGTVRYASAHAHLGRTASRRDDLESLAYTLIF------LHRGRLP 354

Query: 436 WTGY 447
           W GY
Sbjct: 355 WQGY 358


>At4g32440.2 68417.m04618 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 393

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/84 (25%), Positives = 35/84 (41%)
 Frame = +3

Query: 273 HVRRSPPHLPRKLSLRIGARPRDRNFTLLIQLQNGKPKALILEDKSGXSSN*KKMDRLF* 452
           H    P H P  +S R+  RP   N++   +   G PK +   +K G     +K+D +  
Sbjct: 155 HRNSMPLHEPSVVSARLLKRPSPYNWSECAESCTGNPKKMRSLEKEGQQ---QKVDAI-- 209

Query: 453 TELPKDSRSSKRMCSLSVNKQQNG 524
                ++R  K     S+N  + G
Sbjct: 210 -SCRPENRGGKSHVQASLNNHKTG 232


>At4g32440.1 68417.m04617 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 377

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/84 (25%), Positives = 35/84 (41%)
 Frame = +3

Query: 273 HVRRSPPHLPRKLSLRIGARPRDRNFTLLIQLQNGKPKALILEDKSGXSSN*KKMDRLF* 452
           H    P H P  +S R+  RP   N++   +   G PK +   +K G     +K+D +  
Sbjct: 155 HRNSMPLHEPSVVSARLLKRPSPYNWSECAESCTGNPKKMRSLEKEGQQ---QKVDAI-- 209

Query: 453 TELPKDSRSSKRMCSLSVNKQQNG 524
                ++R  K     S+N  + G
Sbjct: 210 -SCRPENRGGKSHVQASLNNHKTG 232


>At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein low
           similarity to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 449

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 143 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLR 244
           ++L +GDF   L LL+ Y P +I+ +  V  KLR
Sbjct: 414 RRLLAGDFTSNLKLLQNYPPTNISHMLYVADKLR 447


>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 47  INTTPDFANFFAAPSSIKSAPSLAGEATWSFFKQL---YSGDFPDILA 181
           ++ +P+  + F   S  ++AP L   A W F K+    +  ++P+ +A
Sbjct: 465 LDFSPEAKSSFVFVSDFRNAPGLGQRALWQFIKRAVKQFEDNYPEFVA 512


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,877,444
Number of Sequences: 28952
Number of extensions: 291309
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)