Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0452
         (716 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2BHK8 Cluster: Sensor protein; n=1; Neptuniibacter cae...    34   4.0  
UniRef50_Q4YYL1 Cluster: Putative uncharacterized protein; n=3; ...    33   5.3  

>UniRef50_Q2BHK8 Cluster: Sensor protein; n=1; Neptuniibacter
           caesariensis|Rep: Sensor protein - Neptuniibacter
           caesariensis
          Length = 678

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
 Frame = -3

Query: 294 NSLFVLYN*RNVFL*LTKYITLICRADVVLF*NKHFNSNSSKHFE--IKIFVIIER---R 130
           N+LF+      VF  +T Y +   RA++V+F NKHF S+   + E  +KI  I+ +   R
Sbjct: 254 NTLFIFVTFTAVFAIVTVYTSRKVRAEIVVFINKHFYSHVYNYREEWLKISNILSQNSDR 313

Query: 129 VQYNVSL 109
             Y +SL
Sbjct: 314 SPYELSL 320


>UniRef50_Q4YYL1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 1555

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 118 IILNPSLNYYKYFDLEMF**IRIKMF-VLKQYNIRTTNQCYVFR*LQKYITL 270
           II+   +NY  YF  E    I++K+F +L Q+NI+ T    ++  L+  I L
Sbjct: 171 IIIASLMNYISYFSYEYRIIIKLKIFKILTQFNIKHTKNISIYNFLESKINL 222


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,881,392
Number of Sequences: 1657284
Number of extensions: 9665114
Number of successful extensions: 13733
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13732
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)