BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0451
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 285 6e-78
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 284 7e-78
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 284 7e-78
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 159 5e-40
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 151 7e-38
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 93 3e-20
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 47 3e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 44 2e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 44 2e-05
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 39 8e-04
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 38 0.001
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 35 0.013
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.023
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 32 0.069
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.49
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 28 1.5
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 28 1.5
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 27 2.0
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 27 2.0
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.6
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 27 3.4
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 6.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 285 bits (698), Expect = 6e-78
Identities = 134/150 (89%), Positives = 140/150 (93%)
Frame = +2
Query: 59 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 238
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 239 DKLKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 418
DKLKA GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 419 GEFEAGISKNGQTREHALLAFTLGVKQLIV 508
GEFEAGISK+GQTREHALLA+TLGVKQLIV
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIV 150
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 284 bits (697), Expect = 7e-78
Identities = 133/150 (88%), Positives = 140/150 (93%)
Frame = +2
Query: 59 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 238
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 239 DKLKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 418
DKLKA GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 419 GEFEAGISKNGQTREHALLAFTLGVKQLIV 508
GEFEAGISK+GQTREHALLA+TLGVKQLIV
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIV 150
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 284 bits (697), Expect = 7e-78
Identities = 133/150 (88%), Positives = 140/150 (93%)
Frame = +2
Query: 59 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 238
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 239 DKLKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 418
DKLKA GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 419 GEFEAGISKNGQTREHALLAFTLGVKQLIV 508
GEFEAGISK+GQTREHALLA+TLGVKQLIV
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIV 150
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 159 bits (385), Expect = 5e-40
Identities = 72/146 (49%), Positives = 100/146 (68%)
Frame = +2
Query: 71 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 250
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 251 AGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 430
G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 431 AGISKNGQTREHALLAFTLGVKQLIV 508
AG + GQTREHA+LA T G+ L+V
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVV 381
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 151 bits (367), Expect = 7e-38
Identities = 72/150 (48%), Positives = 97/150 (64%)
Frame = +2
Query: 71 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 250
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 251 AGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 430
+ G+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 431 AGISKNGQTREHALLAFTLGVKQLIVE*TK 520
G +NGQTREHA L LG+ +++V K
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNK 324
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 93.1 bits (221), Expect = 3e-20
Identities = 58/148 (39%), Positives = 82/148 (55%)
Frame = +2
Query: 65 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 244
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 245 LKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 424
+ GITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 425 FEAGISKNGQTREHALLAFTLGVKQLIV 508
QTREH LLA +GVKQ++V
Sbjct: 154 MP-------QTREHLLLARQVGVKQIVV 174
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 46.8 bits (106), Expect = 3e-06
Identities = 34/113 (30%), Positives = 49/113 (43%)
Frame = +2
Query: 83 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAGVS 262
N+ +I H+D+GK+T T ++Y G F + G V+D L A
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 263 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 421
GITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 44.0 bits (99), Expect = 2e-05
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Frame = +2
Query: 59 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 229
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 230 WVLDKLKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 406
+ L A ++ D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 44.0 bits (99), Expect = 2e-05
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Frame = +2
Query: 59 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 229
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 230 WVLDKLKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 406
+ L A ++ D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 38.7 bits (86), Expect = 8e-04
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 19/147 (12%)
Frame = +2
Query: 83 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAGVS 262
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 263 VGITIDIAL----WK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 385
GITI A W+ FE S Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 386 DCAVLIVAAGTGEFEAGISKNGQTREH 466
D AVL++ A +G I+ + Q R +
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/113 (23%), Positives = 49/113 (43%)
Frame = +2
Query: 83 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAGVS 262
N VI H+D GKST + ++ G I++ + E+ + + G++
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEVER------------RRGIT 107
Query: 263 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 421
V ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 108 VKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 34.7 bits (76), Expect = 0.013
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Frame = +2
Query: 83 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 253
N ++ HVD GK+T L+ G I + T+ + E+ +G + +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 254 GVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 421
+S K Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 81 VISQNDE------KRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.023
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 266 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 421
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 32.3 bits (70), Expect = 0.069
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 314 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 493
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 494 KQLIV 508
K +I+
Sbjct: 163 KHIII 167
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.49
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 323 IIDAPGHRDFIKNMITGTSQADCAVLIV 406
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 285 AISIVIPTLTPAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 154
++S + LTPA ++YL+ PL S S S + +R SIP
Sbjct: 321 SVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 300 SNFQRAISIVIPTLTPAFSLSNTQAYLKDPLPISWASFSNFSMV 169
S F IS+ +PT + FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 257 VSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 412
++VG D ++K + + + + PGH D I+++ S LI A
Sbjct: 186 IAVGCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLIATA 237
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 610 AQWLYQLLMYEDTSSDSSNLAHCMVVQWNPF 518
A W Q Y T + +LA + V+W PF
Sbjct: 154 ANWPQQWASYHATKAAVKHLARALAVEWAPF 184
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 260 SVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 406
S +T+ ++ K +T + ID PGH DF+ + + +D VL+V
Sbjct: 194 STPLTLAVSDMKGKTFAFQC--IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -2
Query: 688 LLLRHCTLTKHLVKLNSVPCIKMARNAQWLYQLLMYEDTSSDSSNLAH 545
LL C + +L S C K+ + WLY L+ D + + + H
Sbjct: 139 LLTMECEDDVDINRLASTLCTKIIMKSNWLYDALVELDNNMGENLIIH 186
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 269 ITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 361
+ I+I + E +++ T+ID PG DFI N
Sbjct: 71 VEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 245 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSNDQWWWT 117
V +PK I I++ F P S S C+Y S+D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,779
Number of Sequences: 5004
Number of extensions: 58239
Number of successful extensions: 214
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -