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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0451
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   285   6e-78
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   284   7e-78
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   284   7e-78
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...   159   5e-40
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...   151   7e-38
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    93   3e-20
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    47   3e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    44   2e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    44   2e-05
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    39   8e-04
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    38   0.001
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    35   0.013
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    34   0.023
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    32   0.069
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    29   0.49 
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    28   1.5  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    28   1.5  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    27   2.0  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    27   2.0  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    27   2.6  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    27   3.4  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   6.0  

>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  285 bits (698), Expect = 6e-78
 Identities = 134/150 (89%), Positives = 140/150 (93%)
 Frame = +2

Query: 59  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 238
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 239 DKLKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 418
           DKLKA    GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+  GT
Sbjct: 61  DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120

Query: 419 GEFEAGISKNGQTREHALLAFTLGVKQLIV 508
           GEFEAGISK+GQTREHALLA+TLGVKQLIV
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIV 150


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  284 bits (697), Expect = 7e-78
 Identities = 133/150 (88%), Positives = 140/150 (93%)
 Frame = +2

Query: 59  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 238
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 239 DKLKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 418
           DKLKA    GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+  GT
Sbjct: 61  DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120

Query: 419 GEFEAGISKNGQTREHALLAFTLGVKQLIV 508
           GEFEAGISK+GQTREHALLA+TLGVKQLIV
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIV 150


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  284 bits (697), Expect = 7e-78
 Identities = 133/150 (88%), Positives = 140/150 (93%)
 Frame = +2

Query: 59  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 238
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 239 DKLKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 418
           DKLKA    GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+  GT
Sbjct: 61  DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120

Query: 419 GEFEAGISKNGQTREHALLAFTLGVKQLIV 508
           GEFEAGISK+GQTREHALLA+TLGVKQLIV
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIV 150


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score =  159 bits (385), Expect = 5e-40
 Identities = 72/146 (49%), Positives = 100/146 (68%)
 Frame = +2

Query: 71  KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 250
           K H+NIV IGHVD+GKST  G++++  G +DKRT+EK E+EA+E GK S+  +W LD   
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295

Query: 251 AGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 430
                G T+++    FET     +++DAPGH+ ++ NMI G SQAD  VL+++A  GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355

Query: 431 AGISKNGQTREHALLAFTLGVKQLIV 508
           AG  + GQTREHA+LA T G+  L+V
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVV 381


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score =  151 bits (367), Expect = 7e-38
 Identities = 72/150 (48%), Positives = 97/150 (64%)
 Frame = +2

Query: 71  KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 250
           K  +++VV GHVDSGKST  G ++++ G I+ R+++K   EA   GKGSF YAW+LD  +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234

Query: 251 AGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 430
              + G+T+D+A   FE+ K    I DAPGHRDFI  MI G S AD AVL+V +    FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294

Query: 431 AGISKNGQTREHALLAFTLGVKQLIVE*TK 520
            G  +NGQTREHA L   LG+ +++V   K
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNK 324


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 58/148 (39%), Positives = 82/148 (55%)
 Frame = +2

Query: 65  KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 244
           ++K H+NI  IGHVD GK+T T   I KC                ++G+ SF     +DK
Sbjct: 49  RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93

Query: 245 LKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 424
                + GITI  A  ++ET+  +   +D PGH D+IKNMITG +  D A+++V+A  G+
Sbjct: 94  APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153

Query: 425 FEAGISKNGQTREHALLAFTLGVKQLIV 508
                    QTREH LLA  +GVKQ++V
Sbjct: 154 MP-------QTREHLLLARQVGVKQIVV 174


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 34/113 (30%), Positives = 49/113 (43%)
 Frame = +2

Query: 83  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAGVS 262
           N+ +I H+D+GK+T T  ++Y  G         F      +  G      V+D L A   
Sbjct: 30  NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76

Query: 263 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 421
            GITI+ A   F      + +ID PGH DF   +    +  D AV I+    G
Sbjct: 77  RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
 Frame = +2

Query: 59  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 229
           MGK     N+ VI HVD GKST T  L+ K G I   K    +F +  A E  +G    +
Sbjct: 13  MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72

Query: 230 WVLDKLKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 406
             +  L A ++     D+     + + + V +ID+PGH DF   +       D A+++V
Sbjct: 73  TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
 Frame = +2

Query: 59  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 229
           MGK     N+ VI HVD GKST T  L+ K G I   K    +F +  A E  +G    +
Sbjct: 13  MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72

Query: 230 WVLDKLKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 406
             +  L A ++     D+     + + + V +ID+PGH DF   +       D A+++V
Sbjct: 73  TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 19/147 (12%)
 Frame = +2

Query: 83  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAGVS 262
           NI +  H+DSGK+T T  ++Y  G I         K+  E+ +G       +D ++    
Sbjct: 61  NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110

Query: 263 VGITIDIAL----WK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 385
            GITI  A     W+               FE S Y + IID PGH DF   +       
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169

Query: 386 DCAVLIVAAGTGEFEAGISKNGQTREH 466
           D AVL++ A +G     I+ + Q R +
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRY 196


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 26/113 (23%), Positives = 49/113 (43%)
 Frame = +2

Query: 83  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAGVS 262
           N  VI H+D GKST +  ++   G I++        +  E+ +            + G++
Sbjct: 60  NWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEVER------------RRGIT 107

Query: 263 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 421
           V       ++ +    Y + +ID PGH DF   ++   +  +  +L+V A  G
Sbjct: 108 VKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
 Frame = +2

Query: 83  NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 253
           N  ++ HVD GK+T    L+   G I  +   T+   +    E+ +G    +  +     
Sbjct: 21  NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80

Query: 254 GVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 421
            +S          K     Y + +ID+PGH DF   + + +   D A ++V A  G
Sbjct: 81  VISQNDE------KRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 266 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 421
           GIT  I  +   F+    ++T +D PGH  F      G + AD  VL+VA   G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +2

Query: 314 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 493
           +V+ +D PGH   +  M+ G +  D A+L++A              QT EH      + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162

Query: 494 KQLIV 508
           K +I+
Sbjct: 163 KHIII 167


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 323 IIDAPGHRDFIKNMITGTSQADCAVLIV 406
           IID PGH  F      GTS  + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 285 AISIVIPTLTPAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 154
           ++S  +  LTPA      ++YL+ PL  S  S S  + +R SIP
Sbjct: 321 SVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 300 SNFQRAISIVIPTLTPAFSLSNTQAYLKDPLPISWASFSNFSMV 169
           S F   IS+ +PT +  FSL+ ++   K  LPI W S  + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 257 VSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 412
           ++VG   D  ++K  +   +  + + PGH D I+++    S      LI  A
Sbjct: 186 IAVGCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLIATA 237


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 610 AQWLYQLLMYEDTSSDSSNLAHCMVVQWNPF 518
           A W  Q   Y  T +   +LA  + V+W PF
Sbjct: 154 ANWPQQWASYHATKAAVKHLARALAVEWAPF 184


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 260 SVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 406
           S  +T+ ++  K +T  +    ID PGH DF+  +    + +D  VL+V
Sbjct: 194 STPLTLAVSDMKGKTFAFQC--IDTPGHVDFVDEVAAPMAISDGVVLVV 240


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -2

Query: 688 LLLRHCTLTKHLVKLNSVPCIKMARNAQWLYQLLMYEDTSSDSSNLAH 545
           LL   C     + +L S  C K+   + WLY  L+  D +   + + H
Sbjct: 139 LLTMECEDDVDINRLASTLCTKIIMKSNWLYDALVELDNNMGENLIIH 186


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 269 ITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 361
           + I+I   + E   +++  T+ID PG  DFI N
Sbjct: 71  VEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 245 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSNDQWWWT 117
           V  +PK I  I++ F  P S  S    C+Y     S+D  W T
Sbjct: 31  VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,779
Number of Sequences: 5004
Number of extensions: 58239
Number of successful extensions: 214
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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