Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0451
(701 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 127 1e-29
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 117 8e-27
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 104 6e-23
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 42 6e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.004
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 34 0.011
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 37 0.018
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 35 0.073
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.1
SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094) 29 2.8
SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 29 4.8
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 127 bits (306), Expect = 1e-29
Identities = 55/122 (45%), Positives = 83/122 (68%)
Frame = +2
Query: 143 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAGVSVGITIDIALWKFETSKYYVT 322
Y G +DKRT+EK+E+EA+E + ++ +W LD + G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 323 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 502
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 503 IV 508
++
Sbjct: 286 VI 287
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 117 bits (282), Expect = 8e-27
Identities = 54/60 (90%), Positives = 55/60 (91%)
Frame = +2
Query: 203 MGKGSFKYAWVLDKLKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 382
MGKGSFKYAWVLDKLKA GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 104 bits (250), Expect = 6e-23
Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
Frame = +2
Query: 275 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 454
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 455 TREHALLAFTLGVKQLIVE*TK--WIPLNHH 541
TREHA+L +LGV QLIV K + L +H
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYH 91
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 59 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 205
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 41.5 bits (93), Expect = 6e-04
Identities = 26/110 (23%), Positives = 51/110 (46%)
Frame = +2
Query: 92 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAGVSVGI 271
+I H D+GK+T T L+ G I + K K + KG+ +++ + GI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAIQEAGAVKSNK----IKKGATSDFMEIERQR-----GI 65
Query: 272 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 421
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 35.1 bits (77), Expect(2) = 0.004
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 206 GKGSFKYAWVLDKLKAGVSVGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQ 382
GK + A + AG + GIT I + + S +T ID PGH F G +
Sbjct: 40 GKTTLLDALRNSSVAAGEAGGITQHIGAFLVKLPSGEKITFIDTPGHAAFNSMRARGANV 99
Query: 383 ADCAVLIVAAGTG 421
D VL+VAA G
Sbjct: 100 TDIVVLVVAADDG 112
Score = 23.0 bits (47), Expect(2) = 0.004
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 86 IVVIGHVDSGKST 124
+ ++GHVD GK+T
Sbjct: 31 VTIMGHVDHGKTT 43
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 37.9 bits (84), Expect = 0.008
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Frame = +2
Query: 74 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFEKEAQ-EMGKGSFKYAWVLDK 244
T I + V+G+V+SGKST G L Y G + + F + + G+ S +L
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 245 LKAGVSVGITIDIALWKF-ETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 415
G V + + E S +T ID GH ++K I G + D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 416 TG 421
G
Sbjct: 231 AG 232
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 34.3 bits (75), Expect(2) = 0.011
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 254 GVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 412
G S GIT I + + + +D PGH F G D +++VAA
Sbjct: 119 GESGGITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
Score = 22.2 bits (45), Expect(2) = 0.011
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 86 IVVIGHVDSGKSTTTGHL 139
+ V+GHVD GK++ ++
Sbjct: 94 VTVMGHVDHGKTSLLDYI 111
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 36.7 bits (81), Expect = 0.018
Identities = 36/135 (26%), Positives = 57/135 (42%)
Frame = +2
Query: 56 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 235
K+ + + NI V+GHVDSGK++ L + F+K Q +G
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKAL------STTASTASFDKNPQSQERGI-----T 76
Query: 236 LDKLKAGVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 415
LD + V + + E +T++D PGH IK +I G A +I G
Sbjct: 77 LDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG------AQIIGECG 130
Query: 416 TGEFEAGISKNGQTR 460
T E G ++G+ +
Sbjct: 131 T--IEGGFGQSGKVK 143
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 34.7 bits (76), Expect = 0.073
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%)
Frame = +2
Query: 59 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 238
M K+ N+ VI HVD GKST T L+ K G I + E + K +
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGII--AAAKAGETRFTDTRKDEQDRCITI 69
Query: 239 DKLKAGVSVGITIDIALWKFETSK-------YYVTIIDAPGHRDFIKNMITGTSQADCAV 397
+S+ + + +++ T + + +ID+PGH DF + D A+
Sbjct: 70 K--STAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGAL 127
Query: 398 LIVAAGTG 421
++V +G
Sbjct: 128 VVVDCVSG 135
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 323 IIDAPGHRDFIKNMITGTSQADCAVLIV 406
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)
Length = 289
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 490 CQTAHRRVN-KMDSTEPPYSEPDLRNQKKYPH 582
C T++ + K D TE + PD+RNQ +Y H
Sbjct: 79 CPTSYVELGGKCDRTENGFDCPDIRNQSQYSH 110
>SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 569
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 526 STEPPYSEPDLRNQKKYPHTSEVGTTTVRFVP 621
S P S RN+ +P EVG TT++F P
Sbjct: 238 SESEPVSPVTKRNKSWFPLKEEVGPTTIQFFP 269
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 83 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 181
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +2
Query: 326 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 505
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 506 V 508
+
Sbjct: 123 I 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,727,605
Number of Sequences: 59808
Number of extensions: 460287
Number of successful extensions: 1088
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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