Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0450
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    26   5.6  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   9.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.9  

>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 175 AKEYNIEKSCDKYMNVDVVKQFMEM-YKWGMLPRGETFVHTN 297
           AK   I +SC KYMN D V Q  +M   W   P  E +   N
Sbjct: 128 AKNLYICESCLKYMNSDHVLQRHKMKCSWSYPPGDEIYRDKN 169


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +1

Query: 82  VNLDMKMKELCIMKLLDHILQXTMXEDIKEIAKEYN 189
           VNL  K  ++   ++++H+L+    ++I+   K+Y+
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 301  LQMEEAVKVFRVLYYAKDFD 360
            L +E      R +YY+KDFD
Sbjct: 1164 LNLESKSTTLRTIYYSKDFD 1183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,021
Number of Sequences: 5004
Number of extensions: 42051
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)