Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0450
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    29   2.1  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    29   2.1  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    29   2.8  
At2g15860.1 68415.m01818 expressed protein  and genefinder             27   8.5  
At1g15540.1 68414.m01869 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   8.5  

>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 277 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRXRIN 402
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 277 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRXRIN 402
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 474  GQVETXAVGSVEAR--GSKSVDEHASVDPXSHPARSPHENIEV 352
            G+ ET + G V+A   GS  V+E  S DP S P ++P E + +
Sbjct: 2332 GRRETMSSGEVKAEEIGSDGVNE--STDPSSLPGQTPQERVRL 2372


>At2g15860.1 68415.m01818 expressed protein  and genefinder
          Length = 512

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -2

Query: 489 DLVRSGQVETXAVGSVEARGSKSVDEHASVDPXSHPARSPHENIEVLSVVEDSED 325
           DL ++ +  +    +V  + +KS+ E   VD  S  +    E  E     +DS+D
Sbjct: 57  DLQKAAEDISRNAAAVAEKAAKSIAEMGEVDEDSESSAKEEEKTEEADTEQDSDD 111


>At1g15540.1 68414.m01869 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to GS-AOP loci [GI:16118889,
           GI:16118887, GI:16118891, GI:16118893]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 320

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 163 IKEIAKEYNIEKSCDKYMNVDVVKQFMEMYKWGMLPRGE 279
           I+ + + YN+EK  +KY  +   +  + + K+  LP GE
Sbjct: 147 IRMLFESYNVEKYTEKY--IGGTRYLLRLLKYRRLPNGE 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,534,204
Number of Sequences: 28952
Number of extensions: 228997
Number of successful extensions: 589
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)