Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0449
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    28   0.95 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.9  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   2.9  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   6.7  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    25   8.9  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.9  

>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +2

Query: 140 FDSIQVNVTCKPGYGVMGRNDVFCLNGWWSDKLPQCVRSARSTVMLASSTNVCSPMVTXV 319
           FD ++V +   PG+   G  D         D L Q V+S    V+L SST     +   +
Sbjct: 199 FDKLKVVILASPGFVARGLYDYIFSMAVKLD-LKQIVKSKNKFVILHSSTGHIHSLNEIL 257

Query: 320 PDPA 331
            DPA
Sbjct: 258 KDPA 261


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 226  PPPVQAEDVVPAHHAV-PRLAGHVHLDRVEGL-AGSSVRRVQD 104
            PPPVQ  + +P+H+AV  R +     D    + +GS+V  ++D
Sbjct: 1379 PPPVQPMNAMPSHNAVNARPSAPERRDSFGSVSSGSNVSSIED 1421


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 282 DASMTVERAERTH*GSLSDHHPFKQKT-SFLP 190
           D S  +E A RT+    S   PFK+KT S LP
Sbjct: 270 DNSAVIEAARRTYSSISSSSSPFKKKTQSHLP 301


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +1

Query: 73  APVPSSRLVRGPEHAERYSRPDLRLDPSERDLQAGVRRDGQER 201
           AP   SRL R P  A RY   D R   S R  ++  RR G+ R
Sbjct: 172 APYEESRLSRAPSRASRYDDDD-RDHRSRR--RSRSRRPGRSR 211


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 79  VPSSRLVRGPEHAERYSRPDLRLDP 153
           +P++  V  P H  RY  PD++  P
Sbjct: 151 IPANISVAKPPHLRRYPLPDVKTSP 175


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 427 GNWDYVATCTPGLSRNG 477
           GNW Y+ TCT  L  NG
Sbjct: 84  GNWHYIWTCT-SLKSNG 99


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 47  PSASGGCVLPQYPAHGSYVVLNTPNATPGQTFDSIQVNVTCKP 175
           P+A  G  +  Y  H +++   +PN+  G T      N T  P
Sbjct: 361 PTAVNGLPMNSYTPHSNHLHSPSPNSNSGPTDSLSAPNSTSSP 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,973
Number of Sequences: 5004
Number of extensions: 45719
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)