Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0449
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0733 + 27639581-27641257 34 0.080
12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894... 34 0.11
01_06_0542 + 30096277-30096340,30096444-30096529,30096810-300969... 31 0.98
03_01_0024 - 214141-215097 30 1.7
06_02_0349 + 15032131-15033117 29 3.0
02_05_0363 - 28297295-28298167 29 4.0
02_04_0209 - 20942021-20942181,20942354-20942420,20942651-209427... 29 4.0
03_02_0512 - 9021961-9022428 28 5.2
01_06_1276 - 35918954-35919106,35919220-35919325,35919477-359195... 28 5.2
07_01_0370 + 2749353-2749786,2749949-2750346,2750435-2750519,275... 28 6.9
11_06_0327 - 22392021-22392316,22393879-22394389,22394843-22394908 27 9.2
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 27 9.2
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869... 27 9.2
>04_04_0733 + 27639581-27641257
Length = 558
Score = 34.3 bits (75), Expect = 0.080
Identities = 30/113 (26%), Positives = 46/113 (40%)
Frame = +1
Query: 82 PSSRLVRGPEHAERYSRPDLRLDPSERDLQAGVRRDGQERRLLLERVVVGQAASVRPFCT 261
P++ ++G + + R + L P+ AG D ++L V QA
Sbjct: 165 PAAGWLKG-KRSRRCKGTGVDLSPTPSACAAGEEEDLANCLVMLSSSKVDQAGVTEAEQR 223
Query: 262 LNSHASVEYKCLLTNGNXGTRPCGSLXPTGTIVQPQCRSPNYYSTVPLGYMRC 420
+S AS E+K L+T P + T + P +P Y STVP G C
Sbjct: 224 SSSSASKEHKRLITF----MEPTTYVLDTVMALPPPAPAPQYVSTVPRGMFEC 272
>12_02_1036 -
25587313-25587890,25589209-25589272,25589356-25589448,
25589533-25589683,25590474-25590539,25590594-25590907
Length = 421
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 490 RSRLYRFWTNLECMWPRSPSSXRCTACS-RAARSSNSWGTCTAAGLLCRSAPG 335
+S + FW+++ C W ++ C +CS + ++ + C A+G C + G
Sbjct: 91 KSVAFVFWSSISCFWRKTDEGEGCKSCSCKKSKCLKLYCVCFASGSHCSESCG 143
>01_06_0542 +
30096277-30096340,30096444-30096529,30096810-30096934,
30097405-30097513,30097865-30097981,30098066-30098149,
30098795-30098914,30099416-30099502,30100160-30100237
Length = 289
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 223 VVGQAASVRPFCTLNSHASVEYKCLLTNGN 312
VVGQ S+ PFCT+ + A + C L G+
Sbjct: 47 VVGQGVSIGPFCTVGASARIGDACQLHAGS 76
>03_01_0024 - 214141-215097
Length = 318
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 58 RRMRPAPVPSSRLVRGPEHAERYSRPDLRLDPSERDL--QAGVRRDGQER 201
RR R P RLV H ++ DL LDP DL GVR G +R
Sbjct: 41 RRQRRPPRRRRRLVAPHPHGGAHALLDLWLDPEPLDLGRHVGVRAHGVQR 90
>06_02_0349 + 15032131-15033117
Length = 328
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 457 ECMWPRSPSSXRCTACSRAARSSNSWGTCTAAGLLCRSAPGSR 329
+C R R C R +S TC +AG LCR+ PG R
Sbjct: 127 DCDEERVIVEPRPAVCDRYPERCDS--TCDSAGYLCRNLPGCR 167
>02_05_0363 - 28297295-28298167
Length = 290
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -3
Query: 448 WPRSPSSXRCTACSRAARSSNSWGTCTAAGLLCRSAPGSR 329
W SPS R T C R S+ G L R +PG R
Sbjct: 206 WQPSPSPMRRTPCRRRQTSTMPSGFAVCLSPLVRPSPGRR 245
>02_04_0209 -
20942021-20942181,20942354-20942420,20942651-20942743,
20943026-20943119,20943690-20943762,20943865-20943973,
20944564-20944663,20945389-20945487,20945571-20945641,
20946067-20946144,20946317-20946403,20946538-20946636
Length = 376
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 220 PVQAEDVVPAHHAVPRLAGHVHLDRVEGL 134
P+ +ED+ H R+ GH+H +R+ L
Sbjct: 105 PILSEDIRYVHFDFHRICGHIHFERLSQL 133
>03_02_0512 - 9021961-9022428
Length = 155
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 64 MRPAPVPSSRLVRGPEHAERYSRPDLRLDPSERDLQAGVRRDGQERRLLLERVVVGQAAS 243
M+P+ ++ R P ++++ LRL+P G DG+ LL +VV +A+
Sbjct: 3 MKPS-ASDKKVKRPPSRLQKHAPATLRLEPPSTPSPTGAWGDGRMPIPLLSPLVVSPSAA 61
Query: 244 VRP 252
P
Sbjct: 62 WEP 64
>01_06_1276 -
35918954-35919106,35919220-35919325,35919477-35919574,
35919693-35919757,35919877-35920033,35920177-35920268,
35920379-35920493,35920574-35920622,35920705-35920858,
35920993-35921019,35921530-35921707,35922326-35922685,
35922979-35922987,35923170-35923238
Length = 543
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 76 PVPSSRLVRGPEHAERYSRPDLRLD 150
P+P +VR AE+Y R LRLD
Sbjct: 448 PLPKHMIVRADRRAEKYFRRGLRLD 472
>07_01_0370 +
2749353-2749786,2749949-2750346,2750435-2750519,
2751200-2751314,2751538-2751591
Length = 361
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 178 PRLAGHVHLDRVEGLAGSSVRRVQDHVRAVSWVLGQDASA 59
P ++ +H D V+ LAGS+V + R V W+ GQ A
Sbjct: 202 PTISVKMH-DYVDDLAGSAVESINPIKRFVHWLSGQPRPA 240
>11_06_0327 - 22392021-22392316,22393879-22394389,22394843-22394908
Length = 290
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +1
Query: 61 RMRPAPVPSSRLVRGPEH---AERYSRPDLRLDPSERDLQAGVRRDGQER 201
+ RP P+P + PEH ER + L + QA VRR+ +E+
Sbjct: 96 KKRPFPLPDDGEILSPEHREMRERMAATCNELGDGFEEFQAEVRREVEEK 145
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 445 PRSPSSXRCTACSRAARSSNSWGTCTAAGLLCRSAPGS 332
P PS+ ++ SS+S T TAAGL S+PGS
Sbjct: 32 PPPPSARARARAGPSSPSSSSPSTPTAAGLSFLSSPGS 69
>01_01_1098 -
8691312-8692430,8692640-8693509,8694522-8696105,
8696199-8696258,8696336-8696414,8696494-8696555,
8697129-8697204,8697367-8697419,8698181-8698270,
8698411-8698458
Length = 1346
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -1
Query: 288 VLDASMTVERAERTH*GSLSDHHPFKQKTSFLPITPYP 175
+++ + + AER L +HH ++ + S +P+ P P
Sbjct: 233 LINCLLMKDPAERLQWSELCEHHFWRSRMSIIPLPPQP 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,460,558
Number of Sequences: 37544
Number of extensions: 374740
Number of successful extensions: 1206
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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