Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0449
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.8  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 224 WSDK-LPQCVRSARSTVMLASSTNVCSPMVTXVPDPAAPW 340
           +SDK +   V+S+   V +    N   PMV  +   AA W
Sbjct: 316 FSDKQIASVVKSSELAVRIQRQENNIRPMVKQIDTVAAEW 355


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 47   PSASGGCVLPQYPAHGSYVVLNTPNATPGQTFD 145
            PSASGG  +P+ P     V L+   +  G+  D
Sbjct: 1357 PSASGGRPVPERPERVPTVDLSPSPSDRGRNDD 1389


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 237 SLSDHHPFKQKTSFLPITPYP 175
           + + + PF   T F+P+ P P
Sbjct: 216 TFAQNGPFNTTTIFVPVKPCP 236


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 441 RGHMHSRFVQKRYKRDRTDXS 503
           R  MHS  ++K+Y    T+ S
Sbjct: 330 RSDMHSDNIEKKYPPSETEQS 350


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 441 RGHMHSRFVQKRYKRDRTDXS 503
           R  MHS  ++K+Y    T+ S
Sbjct: 330 RSDMHSDNIEKKYPPSETEQS 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,733
Number of Sequences: 438
Number of extensions: 3346
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)