Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0449
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase, p...    29   2.5  
At3g03560.1 68416.m00358 expressed protein                             27   7.7  

>At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase,
           putative Similar to Arabidopsis 2A6 (gb|X83096) and to
           tomato ethylene synthesis regulatory protein E8
           (SP|P10967); EST gb|T76913 comes from this gene
          Length = 360

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 240 GSLSDHHPFKQKTSF-LPITPYPGLQVTFTWIESKV 136
           GSLSD  PF   T F +PI  + GL V+   I  K+
Sbjct: 42  GSLSDKKPFVSTTDFAIPIIDFEGLHVSREDIVGKI 77


>At3g03560.1 68416.m00358 expressed protein
          Length = 436

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 148 DPSERDLQAGVRRDGQERRLLLERVVVGQAASVRPFCTLNSHASVEYKC 294
           DP E  L A VR   +E   L ER+    AA ++    LN    +E KC
Sbjct: 35  DPEEMALYAKVRSQEEEIHSLQERIA---AACLKDMQLLNEKYGLERKC 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,000,609
Number of Sequences: 28952
Number of extensions: 260675
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)