Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0447
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    26   4.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   7.1  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   7.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.1  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   9.4  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    25   9.4  

>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 408 LRRRQGQDESKSQLEVRSSV 467
           L + QGQDE+KS  E  SSV
Sbjct: 754 LEQEQGQDEAKSPAEQSSSV 773


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 95   LEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITXVVNKLIRNN 226
            LE+D  +  ++   + A+  SK I  D+  E+I    NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 32  VILCLFVASLYANETSVSDSKLEDDLYNSILVADYDN 142
           V+L LFV  L+   + ++ S L+DD + S  +  Y N
Sbjct: 13  VVLLLFVVFLWLISSFLTSSLLDDDNFFSPFLITYIN 49


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 63  MPTKPQSPIPNSKTIFTTASSLPITTMPLKKAN 161
           + T   S IP+S T+ +++SSL +++ P+  ++
Sbjct: 663 LSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSS 695


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 412 GDGKDKTSPKVSWKFVPLWENNKVYFKIV 498
           G G D    K SW+  PLW   K+Y K++
Sbjct: 300 GYGFDARKRK-SWETYPLWVQVKLYEKVL 327


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 163 DLR-GQEERSHHXCRKQTHTKQQDEL 237
           D+R GQEE       +  HT QQDEL
Sbjct: 7   DIRNGQEEDDLFSENEDNHTSQQDEL 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,323
Number of Sequences: 5004
Number of extensions: 29062
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)