Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0447
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089)               27   9.6  
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)                  27   9.6  

>SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089)
          Length = 828

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 361 LALTLRDDSNNDGXLAYGDGKD 426
           + + L DD NNDG   Y DG D
Sbjct: 691 MMIMLNDDDNNDGNGVYVDGGD 712


>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
          Length = 776

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +2

Query: 47  FVASLYANETSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVIT 196
           F ASL A + S SDS  EDDL    ++ + D+   K++ + + +K +  T
Sbjct: 548 FRASLAAQQDSTSDSSSEDDL----IMDEKDHPQGKARSLSDKQKCKNTT 593


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,749
Number of Sequences: 59808
Number of extensions: 226994
Number of successful extensions: 709
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)