Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0447
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   6.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   6.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   6.0  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   6.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 59   LYANETSVSDSKLEDDLYNSILVADY 136
            L  NET  SD   +  +  SI+V+DY
Sbjct: 969  LNVNETVCSDYFSQGGVIESIMVSDY 994


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 15/69 (21%), Positives = 29/69 (42%)
 Frame = +3

Query: 240  WSTPTAMDARLQGYRPGVLPC*VQTYFRRKQH*AYVQARRSCFDVAR*QQQRWXACLRRR 419
            W+ P  M +      P V     + YF   +     + +R+   V + QQQ+     +++
Sbjct: 1164 WNPPPFMPSPFMAGAPNVPTILPEQYFATSRIRGLQEQQRNAAMVQQQQQQQQQQQQQQQ 1223

Query: 420  QGQDESKSQ 446
            Q Q + + Q
Sbjct: 1224 QQQQQQQQQ 1232



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 384  QQQRWXACLRRRQGQDESKSQLEVRSSVGEQQ 479
            +QQR  A ++++Q Q + + Q + +    +QQ
Sbjct: 1200 EQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQ 1231


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 472 NNKVYFKIVNTELISI 519
           N K+Y+ I+N E I +
Sbjct: 109 NKKLYYNIINIEQIPV 124


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 472 NNKVYFKIVNTELISI 519
           N K+Y+ I+N E I +
Sbjct: 109 NKKLYYNIINIEQIPV 124


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 472 NNKVYFKIVNTELISI 519
           N K+Y+ I+N E I +
Sbjct: 329 NKKLYYNIINIEQIPV 344


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 472 NNKVYFKIVNTELISI 519
           N K+Y+ I+N E I +
Sbjct: 333 NKKLYYNIINIEQIPV 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,938
Number of Sequences: 438
Number of extensions: 2243
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)