Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0447
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot...    33   0.091
At3g27710.1 68416.m03460 zinc finger protein-related contains si...    31   0.37 
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf...    30   0.84 
At4g31110.1 68417.m04415 wall-associated kinase, putative simila...    28   4.5  
At4g31100.1 68417.m04414 wall-associated kinase, putative              28   4.5  
At3g18590.1 68416.m02363 plastocyanin-like domain-containing pro...    28   4.5  
At1g19390.1 68414.m02412 wall-associated kinase, putative simila...    27   5.9  
At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family pr...    27   5.9  

>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
           protein, Xenopus laevis, PIR:T30335
          Length = 1229

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 26  VQVILCLFVASLYANETSVSDSKLEDDLYNSI--LVADYDNAVEKSKQIYEDKKSEVITX 199
           VQ I C+      A+ET++  SK  DDL   I  L+ D +  +E  +Q+ E+  S     
Sbjct: 719 VQAIACVSQREAEAHETAIKLSKENDDLRQKIKVLIEDNNKLIELYEQVAEENSSRAWGK 778

Query: 200 VVNKLIRNN 226
           +      NN
Sbjct: 779 IETDSSSNN 787


>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +2

Query: 62  YANETSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITXVVNKLIRNNKMNCM 241
           Y  +  +   KLED L  SIL     N+  K ++++  K+   +T  VN+L  + ++   
Sbjct: 353 YRYKAHIDSLKLEDKLRKSILEKAVSNSETKDQKVF--KEYSWVTDAVNRLFISRRILSQ 410

Query: 242 EYAYRY 259
            Y + +
Sbjct: 411 SYPFAF 416


>At3g27720.1 68416.m03461 zinc finger protein-related contains
           Pfam:PF01485 IBR domain
          Length = 493

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +2

Query: 62  YANETSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITXVVNKLIRNNKMNCM 241
           Y  +  +   KLED L  SIL     N+  K ++++  K+   I   VN+L R+ ++  +
Sbjct: 313 YRYKAHIDSLKLEDKLKKSILKKAVLNSETKDQKVF--KEYSWIIDAVNRLFRSRRI--L 368

Query: 242 EYAYRY 259
            Y+Y +
Sbjct: 369 SYSYPF 374


>At4g31110.1 68417.m04415 wall-associated kinase, putative similar
           to wall-associated kinase 1, Arabidopsis thaliana,
           gb:AJ009696
          Length = 756

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 107 LYNSILVADYDNAVEKSKQIYEDKKSEVITXVV 205
           +Y  +LV     AV+KSK I EDK  E I  VV
Sbjct: 430 VYKGMLVDGRTVAVKKSKVIDEDKLQEFINEVV 462


>At4g31100.1 68417.m04414 wall-associated kinase, putative
          Length = 786

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 107 LYNSILVADYDNAVEKSKQIYEDKKSEVITXVV 205
           +Y  +LV     AV+KSK I EDK  E I  VV
Sbjct: 458 VYKGMLVDGRTVAVKKSKVIDEDKLQEFINEVV 490


>At3g18590.1 68416.m02363 plastocyanin-like domain-containing
           protein
          Length = 188

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 78  QSPIPNSKTIFTTASSLPITTMPLKKAN 161
           +SP P+S +  +++SSLP +T   KK+N
Sbjct: 134 ESPPPSSSSSSSSSSSLPASTPKAKKSN 161


>At1g19390.1 68414.m02412 wall-associated kinase, putative similar
           to GB:CAB42872 from [Arabidopsis thaliana] (Plant Mol.
           Biol. 39 (6), 1189-1196 (1999))
          Length = 788

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 107 LYNSILVADYDNAVEKSKQIYEDKKSEVITXVV 205
           +Y  +LV     AV+KSK + EDK  E I  VV
Sbjct: 465 VYKGMLVDGRTVAVKKSKVVDEDKLEEFINEVV 497


>At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 421

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 62  YANETSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITXVVNKLIRNNKM 232
           Y NE  V   KLED+L     +   + A E+   I  D ++E ++   NK ++ N++
Sbjct: 305 YINELLVEKQKLEDELKGINEMECKEIAAEEQSAI-ADPEAERVSSKSNKRVKKNEV 360


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,770,746
Number of Sequences: 28952
Number of extensions: 151297
Number of successful extensions: 517
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)