Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0446
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   103   3e-23
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    54   3e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    41   1e-04
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    39   8e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    38   0.002
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    36   0.004
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    33   0.051
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    31   0.12 
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    31   0.12 
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   7.8  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  103 bits (246), Expect = 3e-23
 Identities = 45/52 (86%), Positives = 49/52 (94%)
 Frame = -3

Query: 508 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 353
           DLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGG
Sbjct: 292 DLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGG 343



 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 28/31 (90%), Positives = 29/31 (93%)
 Frame = -2

Query: 350 IXASLSTFQQMWISKQEYDESGPSIVHRKCF 258
           I ASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 345 ILASLSTFQQMWISKQEYDESGPGIVYRKCF 375



 Score = 33.1 bits (72), Expect = 0.039
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -1

Query: 552 ATYNSIMKCDVXIRK 508
           ATYNSIMKCDV IRK
Sbjct: 277 ATYNSIMKCDVDIRK 291


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = -3

Query: 505 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 353
           LY+N VLSGG+T+  G  +R   E+ A++    ++KI A PER ++ W+GG
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGG 348



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/31 (38%), Positives = 23/31 (74%)
 Frame = -2

Query: 350 IXASLSTFQQMWISKQEYDESGPSIVHRKCF 258
           I ASLSTF+++ I+ +EY ++  +++ R+ F
Sbjct: 350 ILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 11/62 (17%)
 Frame = -3

Query: 505 LYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 359
           LY   VLSGG++MY G+  R++KEI  L         P+ +   K+KI   P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352

Query: 358 GG 353
           GG
Sbjct: 353 GG 354


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
 Frame = -3

Query: 505 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGG 353
           L  N ++ GGT++  G + R+Q E++ L P + ++KI A     ER Y+ W+GG
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGG 398



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 3/33 (9%)
 Frame = -2

Query: 350 IXASLSTFQQMWISKQEYDESGP---SIVHRKC 261
           I +SL TF Q+WIS+QEY+E G    +++ ++C
Sbjct: 400 ILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = -2

Query: 350 IXASLSTFQQMWISKQEYDESG 285
           I ASL  FQ +W+SKQEYDE G
Sbjct: 397 ILASLDNFQHLWVSKQEYDEVG 418



 Score = 35.1 bits (77), Expect = 0.010
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -3

Query: 505 LYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGG 353
           L  N V++GGT++ PG+++R+Q E+  LA  S + +           +VW GG
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGG 395


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 505 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 380
           L  N V  GG   +PG   R+  E+ +LAP+  ++K+  P +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSD 360


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 32.7 bits (71), Expect = 0.051
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 505 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIG 356
           L +N +++GG    PG+  R+++E+T++ P    I +          W G
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKG 683


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 505 LYANTVLSGGTTMYPGIADRMQKEI 431
           LY N VLSGG+T++    +R+Q+++
Sbjct: 326 LYKNIVLSGGSTLFKNFGNRLQRDL 350


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -3

Query: 508 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIG 356
           +LY++ ++ GG   +PG A  +++ I +   +   I +I PP   + ++  W G
Sbjct: 528 NLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKG 581


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 671 HRDQSPXXLXFHGQYTIGNENSVPESLQPSFL 576
           HRD  P  L F     + ++N  P SL+P+ L
Sbjct: 186 HRDIKPENLLFQPIEYLPSQNYTPPSLEPNKL 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,377
Number of Sequences: 5004
Number of extensions: 43270
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)