Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0446
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 3e-24
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 4e-24
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 8e-24
SB_56| Best HMM Match : Actin (HMM E-Value=0) 107 8e-24
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 107 1e-23
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 3e-23
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 94 8e-20
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 34 0.12
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082) 30 2.0
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_30054| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 109 bits (261), Expect = 3e-24
Identities = 49/52 (94%), Positives = 52/52 (100%)
Frame = -3
Query: 508 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 353
DLYANTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGG
Sbjct: 266 DLYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGG 317
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = -2
Query: 350 IXASLSTFQQMWISKQEYDESGPSIVHRKCF 258
I ASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 319 ILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -1
Query: 549 TYNSIMKCDVXIRK 508
TYNSIMKCDV IRK
Sbjct: 252 TYNSIMKCDVDIRK 265
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 108 bits (260), Expect = 4e-24
Identities = 50/52 (96%), Positives = 51/52 (98%)
Frame = -3
Query: 508 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 353
DLYANTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGG
Sbjct: 255 DLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGG 306
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = -2
Query: 350 IXASLSTFQQMWISKQEYDESGPSIVHRKCF 258
I ASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 308 ILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -1
Query: 549 TYNSIMKCDVXIRK 508
TYNSIMKCDV IRK
Sbjct: 241 TYNSIMKCDVDIRK 254
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 107 bits (257), Expect = 8e-24
Identities = 49/52 (94%), Positives = 51/52 (98%)
Frame = -3
Query: 508 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 353
DLYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGG
Sbjct: 293 DLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGG 344
Score = 68.1 bits (159), Expect = 6e-12
Identities = 30/31 (96%), Positives = 30/31 (96%)
Frame = -2
Query: 350 IXASLSTFQQMWISKQEYDESGPSIVHRKCF 258
I ASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 346 ILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -1
Query: 549 TYNSIMKCDVXIRK 508
TYNSIMKCDV IRK
Sbjct: 279 TYNSIMKCDVDIRK 292
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 107 bits (257), Expect = 8e-24
Identities = 49/52 (94%), Positives = 51/52 (98%)
Frame = -3
Query: 508 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 353
DLYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGG
Sbjct: 292 DLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGG 343
Score = 68.1 bits (159), Expect = 6e-12
Identities = 30/31 (96%), Positives = 30/31 (96%)
Frame = -2
Query: 350 IXASLSTFQQMWISKQEYDESGPSIVHRKCF 258
I ASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 345 ILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -1
Query: 549 TYNSIMKCDVXIRK 508
TYNSIMKCDV IRK
Sbjct: 278 TYNSIMKCDVDIRK 291
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 107 bits (256), Expect = 1e-23
Identities = 49/52 (94%), Positives = 51/52 (98%)
Frame = -3
Query: 508 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 353
DLYANTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGG
Sbjct: 293 DLYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGG 344
Score = 68.1 bits (159), Expect = 6e-12
Identities = 30/31 (96%), Positives = 30/31 (96%)
Frame = -2
Query: 350 IXASLSTFQQMWISKQEYDESGPSIVHRKCF 258
I ASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 346 ILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -1
Query: 549 TYNSIMKCDVXIRK 508
TYNSIMKCDV IRK
Sbjct: 279 TYNSIMKCDVDIRK 292
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 105 bits (252), Expect = 3e-23
Identities = 48/52 (92%), Positives = 51/52 (98%)
Frame = -3
Query: 508 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 353
DLYANTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGG
Sbjct: 292 DLYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGG 343
Score = 68.1 bits (159), Expect = 6e-12
Identities = 30/31 (96%), Positives = 30/31 (96%)
Frame = -2
Query: 350 IXASLSTFQQMWISKQEYDESGPSIVHRKCF 258
I ASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 345 ILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -1
Query: 549 TYNSIMKCDVXIRK 508
TYNSIMKCDV IRK
Sbjct: 278 TYNSIMKCDVDIRK 291
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/52 (78%), Positives = 48/52 (92%)
Frame = -3
Query: 508 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 353
DLY+N VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGG
Sbjct: 66 DLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGG 117
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = -2
Query: 350 IXASLSTFQQMWISKQEYDESGPSIVHRKCF 258
I ASLSTFQQMWI+K+EY E GP IVHRKCF
Sbjct: 119 ILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -1
Query: 552 ATYNSIMKCDVXIRK 508
A YN IMKCDV IRK
Sbjct: 51 AIYNCIMKCDVDIRK 65
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -3
Query: 508 DLYANTVLSGGTTMYPGIADRMQKEITAL 422
+ Y + VLSGG+TMYPG+ R+++EI L
Sbjct: 296 EFYKHIVLSGGSTMYPGLPSRLEREIKQL 324
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 505 LYANTVLSGGTTMYPGIADRMQKEITA-LAPSTMKIKIIAPPERKYSVWIGG 353
LY VL G T+ Q +TA KI+I PP RK+ V++GG
Sbjct: 324 LYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGG 375
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 16/67 (23%)
Frame = -3
Query: 505 LYANTVLSGGTTMYPGIADRMQKEIT----------------ALAPSTMKIKIIAPPERK 374
LY N VLSGG+TM+ R+Q++I + P ++ ++I+ ++
Sbjct: 242 LYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQR 301
Query: 373 YSVWIGG 353
Y+VW GG
Sbjct: 302 YAVWFGG 308
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Frame = -3
Query: 505 LYANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGG 353
L N VL GGT M PG R+ +EI L S +K+ PP + W+GG
Sbjct: 77 LAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGG 136
>SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082)
Length = 628
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/91 (23%), Positives = 38/91 (41%)
Frame = -2
Query: 539 PS*SATXTSVRLVRQHRIVRWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMD 360
P+ AT S + +R I++ +H+ RP A+G SS P DN E
Sbjct: 188 PNNRATKVSKKSIRT--ILKVTNHLRTQPRPKARGQGSSTPWDNNFWLDLDYLEAAKAAQ 245
Query: 359 RWIIXASLSTFQQMWISKQEYDESGPSIVHR 267
+ + + ++W Q + +++HR
Sbjct: 246 KCTAHFTALMYTEIWCDVQRHSAFPNAVIHR 276
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 496 NTVLSGGTTMYPGIADRMQKEITALAP 416
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_30054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 487 IRCWRTSLTDVHVALHDGVICGSWMPQLHTKNXG*RDS 600
+RCWR VH+ LHD + P + N G RD+
Sbjct: 125 LRCWRM----VHLILHDLELRAQRQPHMSGNNTGNRDN 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,849,893
Number of Sequences: 59808
Number of extensions: 363807
Number of successful extensions: 767
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -