Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0446
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             111   8e-27
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.3  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  111 bits (266), Expect = 8e-27
 Identities = 51/52 (98%), Positives = 52/52 (100%)
 Frame = -3

Query: 508 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 353
           DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGG
Sbjct: 67  DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGG 118



 Score = 31.5 bits (68), Expect = 0.008
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -1

Query: 549 TYNSIMKCDVXIRK 508
           TYNSIMKCDV IRK
Sbjct: 53  TYNSIMKCDVDIRK 66



 Score = 29.9 bits (64), Expect = 0.024
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 350 IXASLSTFQQMWIS 309
           I ASLSTFQQMWIS
Sbjct: 120 ILASLSTFQQMWIS 133


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 491 RIVRWYHHVPWNRRPYAK 438
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 491 RIVRWYHHVPWNRRPYAK 438
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,689
Number of Sequences: 438
Number of extensions: 3326
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)