Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0445
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p...    29   2.4  
U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain fami...    29   4.2  
Z66513-3|CAA91331.1|  186|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    27   9.7  

>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = +1

Query: 97  DPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRQIPRMVAS 276
           +  GL R   + + ET  +K H    P S   +V      + R A A   F Q PR+   
Sbjct: 789 ESRGLHRHEEKAQIETSTIKIH---EPSSPPPSVHKFGAVNTRAAPAPVQFMQTPRIAVK 845

Query: 277 HHRPLG 294
            H P G
Sbjct: 846 IHEPTG 851


>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = +1

Query: 97  DPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRQIPRMVAS 276
           +  GL R   + + ET  +K H    P S   +V      + R A A   F Q PR+   
Sbjct: 789 ESRGLHRHEEKAQIETSTIKIH---EPSSPPPSVHKFGAVNTRAAPAPVQFMQTPRIAVK 845

Query: 277 HHRPLG 294
            H P G
Sbjct: 846 IHEPTG 851


>U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain family
           protein 6 protein.
          Length = 287

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = -2

Query: 663 HSKPPDKGKXLINVQTHRTRNTAYXFSIKSFSKSARKLPQGYWLVAANVHSELLFDPSMS 484
           H K P + + ++N Q  R   TA+  S K   K   +L     L    V  ++ F    +
Sbjct: 159 HRKTPKRPRTILNAQQRRQFKTAFERSSKPSRKVREQLANETGLSVRVV--QVWFQNQRA 216

Query: 483 ALPIIAKQNSPSVGLFTHQKGT 418
            +  + K++S S   F H  G+
Sbjct: 217 KIKKLNKKDSDSGDTFKHGPGS 238


>Z66513-3|CAA91331.1|  186|Caenorhabditis elegans Hypothetical
           protein F54D5.4 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 142 TRL-VKSHCLEPPDSRGSTVSISLPD-SARLASALEAFRQIPRMVASHHRPLGRVHEPNV 315
           TRL  K +C E   + G+ +     D S    + +E  R+I  ++A H     R  +PN 
Sbjct: 44  TRLNTKYYCFEGCLNTGTALQNCKVDMSGNNGTRIERSREIKEVIALHQLARQRDEDPNA 103

Query: 316 RNC 324
           ++C
Sbjct: 104 KSC 106


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 335 REEPQFRTFGSCTRPSGRWCEATIRGICLNASKAEASLA 219
           R EP +R F    RPSG WC     G   +A+KA+A  A
Sbjct: 255 RCEPGWRFFN---RPSGGWCIRVFTG--FHAAKADAEAA 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,167
Number of Sequences: 27780
Number of extensions: 321959
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)