Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0444
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 95 5e-21
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 94 9e-21
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 28 0.85
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 27 2.0
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 2.6
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 7.9
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 7.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 7.9
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 95.1 bits (226), Expect = 5e-21
Identities = 48/90 (53%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = +3
Query: 75 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRL- 251
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY V+ +
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 252 VPNQCRIMGYGRAVARIPRVRGGGNHXSGK 341
G GRA+ARIPRV GGG H SG+
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHRSGQ 89
Score = 65.3 bits (152), Expect = 5e-12
Identities = 32/63 (50%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 256 QTSAESWGTD-VLSPEFLXXXXXXXXXXXRSFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
QTSAESWGT L+ +FGNMCR GRMFAPTK WR+WH +VN +
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120
Query: 433 RXA 441
R A
Sbjct: 121 RYA 123
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 94.3 bits (224), Expect = 9e-21
Identities = 47/90 (52%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = +3
Query: 75 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRL- 251
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY V+ +
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 252 VPNQCRIMGYGRAVARIPRVRGGGNHXSGK 341
G GRA+ARIPRV GGG H SG+
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHRSGQ 89
Score = 65.3 bits (152), Expect = 5e-12
Identities = 32/63 (50%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 256 QTSAESWGTD-VLSPEFLXXXXXXXXXXXRSFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
QTSAESWGT L+ +FGNMCR GRMFAPTK WR+WH +VN +
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120
Query: 433 RXA 441
R A
Sbjct: 121 RYA 123
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 27.9 bits (59), Expect = 0.85
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 269 NHGVRTCCRPNSSCXXXXXXXVR*GPSVT-CVVVDVCSPPRSPGGAGTVASTSDSXXRLX 445
N+ TCC P S C + GP + C+ VD+ S A + ST+ S +
Sbjct: 80 NYNGPTCCEPGSEC-------IYNGPYYSQCIPVDIDPSSSSSSAASSTTSTTSSSSLVS 132
Query: 446 SS 451
S+
Sbjct: 133 ST 134
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 74 SIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGP 184
SI SP+ SVG + D + S + P+ + G + P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 136 APCTVSLFSEYTDTKGRATDRLISLL 59
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/57 (19%), Positives = 29/57 (50%)
Frame = +3
Query: 87 RPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLVP 257
+PL +++ + + ++ +P FK+ + +V+ + S++ + +P V L P
Sbjct: 80 KPLPPAINDELDRLANESQDIPSKFKSSLDSKMVSQLLGSLAVSQNRPAYVVNHLPP 136
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 218 LEAALLRDKEAGPKPVPNHGVRTCCRPNS 304
L+A+ L+D+E K +P+ T PN+
Sbjct: 554 LDASALKDREPSEKELPSTAKETSFAPNA 582
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = -2
Query: 328 WLPPPRTRGIRAT--ARPYPMIRHWF 257
W P P + AT A+ P+I+HW+
Sbjct: 429 WAPHPFNKRSGATKRAQDVPLIKHWY 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,933
Number of Sequences: 5004
Number of extensions: 34421
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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