Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0444
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 77 7e-15
07_01_0578 + 4295386-4296489,4297394-4297507 75 3e-14
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 33 0.16
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.16
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 30 0.85
08_02_1285 - 25881091-25881798 29 1.5
07_01_0561 + 4171812-4172144,4173468-4174253 29 2.0
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 2.6
03_05_1100 - 30404224-30405018,30405100-30405435 29 2.6
03_06_0294 + 32893050-32893340,32894540-32895322 28 3.4
09_01_0005 - 193214-193228,193659-193776,193876-194072,194534-19... 27 6.0
06_03_0807 - 24789843-24789859,24791536-24791613,24793589-24793709 27 6.0
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561 27 7.9
09_06_0153 - 21243108-21245660 27 7.9
03_01_0147 - 1170481-1171260,1171332-1171511 27 7.9
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 77.0 bits (181), Expect = 7e-15
Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Frame = +3
Query: 78 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRL- 251
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY V+RR
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 252 VPNQCRIMGYGRAVARIPRVRGGGNHXSGK 341
G GRAV+RIPRV GGG H +G+
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQ 92
Score = 74.1 bits (174), Expect = 5e-14
Identities = 37/63 (58%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +1
Query: 256 QTSAESWGTD-VLSPEFLXXXXXXXXXXXRSFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
QTSAESWGT +S +FGNMCRGGRMFAPTK WRRWHRRVN+R
Sbjct: 64 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLR 123
Query: 433 RXA 441
R A
Sbjct: 124 RIA 126
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 74.9 bits (176), Expect = 3e-14
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Frame = +3
Query: 87 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRL-VP 257
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY V+RR
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 258 NQCRIMGYGRAVARIPRVRGGGNHXSGK 341
G GRAV+RIPRV GGG H +G+
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQ 93
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/63 (55%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +1
Query: 256 QTSAESWGTD-VLSPEFLXXXXXXXXXXXRSFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
QTSAESWGT +S +FGNMCRGGRMFAPTK WR+WHRRVN+
Sbjct: 65 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLR 124
Query: 433 RXA 441
R A
Sbjct: 125 RVA 127
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 32.7 bits (71), Expect = 0.16
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 50 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CXRF 205
ASL N I +PTF +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 32.7 bits (71), Expect = 0.16
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +2
Query: 50 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CXRF 205
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 30.3 bits (65), Expect = 0.85
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 50 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CXRF 205
ASL N I +PT +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_1285 - 25881091-25881798
Length = 235
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 113 EERDGAGCSQAPPVRVQGAHTSGPG 187
EE DG G ++A V +GAH +G G
Sbjct: 173 EEEDGEGSAEAMEVEEEGAHLAGAG 197
>07_01_0561 + 4171812-4172144,4173468-4174253
Length = 372
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 290 STSVPHDSALVWDQPPCHAVRLPRVLGHRNV-XIIDQVRTYG 168
S S +S +VWD V LPR H N + Q+ TYG
Sbjct: 71 SWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYG 112
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 50 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CXRF 205
ASL+ N ++ +PT V ++ G S V + GAHT G + C F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>03_05_1100 - 30404224-30405018,30405100-30405435
Length = 376
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 272 DSALVWDQPPCHAVRLPRVLGHRNV-XIIDQVRTYG 168
+S +VWD AV LPR H N + Q+ TYG
Sbjct: 78 NSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYG 113
>03_06_0294 + 32893050-32893340,32894540-32895322
Length = 357
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 290 STSVPHDSALVWDQPPCHAVRLPRVLGHRNV-XIIDQVRTYG 168
S S ++S +VWD V LPR H N + Q+ TYG
Sbjct: 57 SWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYG 98
>09_01_0005 -
193214-193228,193659-193776,193876-194072,194534-195493
Length = 429
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -2
Query: 355 CYRRTLPDXWLPPPRTRGIRATARPYPMIRHWFGTSLLVTQ*GCLEFLDIETXTSLTRSG 176
CY+ T D P PRT + RP P +S L+T C +T T TRSG
Sbjct: 185 CYKPTRQDRTPPLPRTPDL--LVRPPPRDHLSSASSQLMTNHTCKINSTCKTTTFKTRSG 242
>06_03_0807 - 24789843-24789859,24791536-24791613,24793589-24793709
Length = 71
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 223 LEFLDIETXTSLTRSGRMGALNTNGRGLAAPCTVSLFSE 107
LE L E S+ R GR+ + G+G PC+ ++ E
Sbjct: 28 LEALQEEESVSVQRRGRVENSSREGKGRVMPCSAYVWGE 66
>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
Length = 495
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 350 VTCVVVDVCSPPRSPGGAGTVASTSDSXXRLXSSRXFYRRPTLF 481
V V++D C+P G G+ ++T + + SS RP+ F
Sbjct: 5 VARVLIDSCAPDDESGSQGSESATKNQGGIIPSSTKCATRPSPF 48
>09_06_0153 - 21243108-21245660
Length = 850
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 136 APCTVSLFSEYTDTKGRATDRLISLL*RSYTSEIYTNSGDK 14
APCTV +F++ +G A+ RL + + S + N GD+
Sbjct: 612 APCTVGVFADRPFWRGGASFRLPTKISTSEETTAARNQGDQ 652
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 44 GIASLK*R-NESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSG 181
G ASL+ ++I +PTF++ + G +Q V + GAHT G
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVG 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,354,313
Number of Sequences: 37544
Number of extensions: 319327
Number of successful extensions: 951
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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