Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0444
         (482 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                93   1e-19
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)                 27   6.1  
SB_44980| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 49/88 (55%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
 Frame = +3

Query: 84  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLVPNQ 263
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V  +L  +Q
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAV-NKLAGHQ 58

Query: 264 --CRIMGYGRAVARIPRVRGGGNHXSGK 341
                 G GRAVARIPRVRGGG H SG+
Sbjct: 59  TSAESWGTGRAVARIPRVRGGGTHRSGQ 86



 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WR+WH +VN++Q 
Sbjct: 58  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQR 117

Query: 433 RXA 441
           R A
Sbjct: 118 RFA 120


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 151  GRGLAAPCTVSLFSEYTDTKGRATDRLI 68
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1110

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 382 PTKPWRRWHRRVNLRQXRXAXQQPXLLPASN 474
           PT P R W + +N  Q      QP LLP S+
Sbjct: 61  PTPPPRNWRKVLNDDQWYQLFPQPPLLPPSS 91


>SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)
          Length = 1122

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 382 PTKPWRRWHRRVNLRQXRXAXQQPXLLPASN 474
           PT P R W R +N  Q      +P LLP S+
Sbjct: 239 PTPPPRNWRRVLNDDQWYQLFSRPPLLPPSS 269


>SB_44980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 80  GSPTFSVGVFREERDGAGCSQAPPVRVQG 166
           GS TF  G+  E+RD A C   P + ++G
Sbjct: 51  GSSTFVDGIQIEDRDDAACFSNPEMCLEG 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,934,684
Number of Sequences: 59808
Number of extensions: 308973
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)