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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0444
         (482 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L20868-1|AAA60281.2|  426|Homo sapiens ribosomal protein L4 prot...   106   5e-23
AB208977-1|BAD92214.1|  441|Homo sapiens ribosomal protein L4 va...   102   6e-22
D23660-1|BAA04887.1|  427|Homo sapiens ribosomal protein protein.     102   8e-22
BC095427-1|AAH95427.1|  427|Homo sapiens ribosomal protein L4 pr...   102   8e-22
BC066925-1|AAH66925.1|  427|Homo sapiens ribosomal protein L4 pr...   102   8e-22
BC014653-1|AAH14653.1|  427|Homo sapiens ribosomal protein L4 pr...   102   8e-22
BC010151-1|AAH10151.1|  427|Homo sapiens ribosomal protein L4 pr...   102   8e-22
BC009888-1|AAH09888.1|  427|Homo sapiens ribosomal protein L4 pr...   102   8e-22
BC007996-1|AAH07996.1|  427|Homo sapiens ribosomal protein L4 pr...   102   8e-22
BC007748-1|AAH07748.1|  427|Homo sapiens ribosomal protein L4 pr...   102   8e-22
BC005817-1|AAH05817.1|  427|Homo sapiens ribosomal protein L4 pr...   102   8e-22
BC001365-1|AAH01365.1|  427|Homo sapiens ribosomal protein L4 pr...   102   8e-22
AK223057-1|BAD96777.1|  427|Homo sapiens ribosomal protein L4 va...   102   8e-22
AB061820-1|BAB79458.1|  427|Homo sapiens ribosomal protein L4 pr...   102   8e-22
AL390776-3|CAI12492.1|  250|Homo sapiens prion protein interacti...    31   2.1  

>L20868-1|AAA60281.2|  426|Homo sapiens ribosomal protein L4
           protein.
          Length = 426

 Score =  106 bits (254), Expect = 5e-23
 Identities = 56/91 (61%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
 Frame = +3

Query: 75  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLV 254
           ++VARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L 
Sbjct: 1   MAVARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDMVNFVHTNLRKNNRQPYAVS-ELA 58

Query: 255 PNQCRI--MGYGRAVARIPRVRGGGNHXSGK 341
            +Q R    G GRAVARIPRVRGGG H SG+
Sbjct: 59  GHQTRAESWGTGRAVARIPRVRGGGTHRSGQ 89



 Score = 71.7 bits (168), Expect = 1e-12
 Identities = 35/63 (55%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QT AESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 61  QTRAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 433 RXA 441
           R A
Sbjct: 121 RYA 123


>AB208977-1|BAD92214.1|  441|Homo sapiens ribosomal protein L4
           variant protein.
          Length = 441

 Score =  102 bits (245), Expect = 6e-22
 Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
 Frame = +3

Query: 72  SLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRL 251
           +++ ARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L
Sbjct: 14  AMACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS-EL 71

Query: 252 VPNQ--CRIMGYGRAVARIPRVRGGGNHXSGK 341
             +Q      G GRAVARIPRVRGGG H SG+
Sbjct: 72  AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 103



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 75  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 134

Query: 433 RXA 441
           R A
Sbjct: 135 RYA 137


>D23660-1|BAA04887.1|  427|Homo sapiens ribosomal protein protein.
          Length = 427

 Score =  102 bits (244), Expect = 8e-22
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
 Frame = +3

Query: 75  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLV 254
           ++ ARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L 
Sbjct: 1   MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS-ELA 58

Query: 255 PNQ--CRIMGYGRAVARIPRVRGGGNHXSGK 341
            +Q      G GRAVARIPRVRGGG H SG+
Sbjct: 59  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 433 RXA 441
           R A
Sbjct: 121 RYA 123


>BC095427-1|AAH95427.1|  427|Homo sapiens ribosomal protein L4
           protein.
          Length = 427

 Score =  102 bits (244), Expect = 8e-22
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
 Frame = +3

Query: 75  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLV 254
           ++ ARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L 
Sbjct: 1   MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS-ELA 58

Query: 255 PNQ--CRIMGYGRAVARIPRVRGGGNHXSGK 341
            +Q      G GRAVARIPRVRGGG H SG+
Sbjct: 59  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 433 RXA 441
           R A
Sbjct: 121 RYA 123


>BC066925-1|AAH66925.1|  427|Homo sapiens ribosomal protein L4
           protein.
          Length = 427

 Score =  102 bits (244), Expect = 8e-22
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
 Frame = +3

Query: 75  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLV 254
           ++ ARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L 
Sbjct: 1   MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS-ELA 58

Query: 255 PNQ--CRIMGYGRAVARIPRVRGGGNHXSGK 341
            +Q      G GRAVARIPRVRGGG H SG+
Sbjct: 59  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 433 RXA 441
           R A
Sbjct: 121 RYA 123


>BC014653-1|AAH14653.1|  427|Homo sapiens ribosomal protein L4
           protein.
          Length = 427

 Score =  102 bits (244), Expect = 8e-22
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
 Frame = +3

Query: 75  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLV 254
           ++ ARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L 
Sbjct: 1   MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS-ELA 58

Query: 255 PNQ--CRIMGYGRAVARIPRVRGGGNHXSGK 341
            +Q      G GRAVARIPRVRGGG H SG+
Sbjct: 59  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 433 RXA 441
           R A
Sbjct: 121 RYA 123


>BC010151-1|AAH10151.1|  427|Homo sapiens ribosomal protein L4
           protein.
          Length = 427

 Score =  102 bits (244), Expect = 8e-22
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
 Frame = +3

Query: 75  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLV 254
           ++ ARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L 
Sbjct: 1   MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS-ELA 58

Query: 255 PNQ--CRIMGYGRAVARIPRVRGGGNHXSGK 341
            +Q      G GRAVARIPRVRGGG H SG+
Sbjct: 59  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 433 RXA 441
           R A
Sbjct: 121 RYA 123


>BC009888-1|AAH09888.1|  427|Homo sapiens ribosomal protein L4
           protein.
          Length = 427

 Score =  102 bits (244), Expect = 8e-22
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
 Frame = +3

Query: 75  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLV 254
           ++ ARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L 
Sbjct: 1   MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS-ELA 58

Query: 255 PNQ--CRIMGYGRAVARIPRVRGGGNHXSGK 341
            +Q      G GRAVARIPRVRGGG H SG+
Sbjct: 59  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 433 RXA 441
           R A
Sbjct: 121 RYA 123


>BC007996-1|AAH07996.1|  427|Homo sapiens ribosomal protein L4
           protein.
          Length = 427

 Score =  102 bits (244), Expect = 8e-22
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
 Frame = +3

Query: 75  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLV 254
           ++ ARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L 
Sbjct: 1   MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS-ELA 58

Query: 255 PNQ--CRIMGYGRAVARIPRVRGGGNHXSGK 341
            +Q      G GRAVARIPRVRGGG H SG+
Sbjct: 59  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 433 RXA 441
           R A
Sbjct: 121 RYA 123


>BC007748-1|AAH07748.1|  427|Homo sapiens ribosomal protein L4
           protein.
          Length = 427

 Score =  102 bits (244), Expect = 8e-22
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
 Frame = +3

Query: 75  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLV 254
           ++ ARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L 
Sbjct: 1   MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS-ELA 58

Query: 255 PNQ--CRIMGYGRAVARIPRVRGGGNHXSGK 341
            +Q      G GRAVARIPRVRGGG H SG+
Sbjct: 59  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 433 RXA 441
           R A
Sbjct: 121 RYA 123


>BC005817-1|AAH05817.1|  427|Homo sapiens ribosomal protein L4
           protein.
          Length = 427

 Score =  102 bits (244), Expect = 8e-22
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
 Frame = +3

Query: 75  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLV 254
           ++ ARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L 
Sbjct: 1   MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS-ELA 58

Query: 255 PNQ--CRIMGYGRAVARIPRVRGGGNHXSGK 341
            +Q      G GRAVARIPRVRGGG H SG+
Sbjct: 59  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 433 RXA 441
           R A
Sbjct: 121 RYA 123


>BC001365-1|AAH01365.1|  427|Homo sapiens ribosomal protein L4
           protein.
          Length = 427

 Score =  102 bits (244), Expect = 8e-22
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
 Frame = +3

Query: 75  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLV 254
           ++ ARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L 
Sbjct: 1   MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS-ELA 58

Query: 255 PNQ--CRIMGYGRAVARIPRVRGGGNHXSGK 341
            +Q      G GRAVARIPRVRGGG H SG+
Sbjct: 59  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 433 RXA 441
           R A
Sbjct: 121 RYA 123


>AK223057-1|BAD96777.1|  427|Homo sapiens ribosomal protein L4
           variant protein.
          Length = 427

 Score =  102 bits (244), Expect = 8e-22
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
 Frame = +3

Query: 75  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLV 254
           ++ ARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L 
Sbjct: 1   MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHANLRKNNRQPYAVS-ELA 58

Query: 255 PNQ--CRIMGYGRAVARIPRVRGGGNHXSGK 341
            +Q      G GRAVARIPRVRGGG H SG+
Sbjct: 59  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 433 RXA 441
           R A
Sbjct: 121 RYA 123


>AB061820-1|BAB79458.1|  427|Homo sapiens ribosomal protein L4
           protein.
          Length = 427

 Score =  102 bits (244), Expect = 8e-22
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
 Frame = +3

Query: 75  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRRLV 254
           ++ ARPL+SVYSEK E+  G    LP VFKAPIRPD+VN VH ++ KN+RQPY V+  L 
Sbjct: 1   MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS-ELA 58

Query: 255 PNQ--CRIMGYGRAVARIPRVRGGGNHXSGK 341
            +Q      G GRAVARIPRVRGGG H SG+
Sbjct: 59  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 89



 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           QTSAESWGT                   + +FGNMCRGGRMFAPTK WRRWHRRVN  Q 
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 433 RXA 441
           R A
Sbjct: 121 RYA 123


>AL390776-3|CAI12492.1|  250|Homo sapiens prion protein interacting
           protein protein.
          Length = 250

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 71  ESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTS 178
           E   SP   +G+F   RD +GCS   P++   A  S
Sbjct: 54  EPSASPAAGLGIFEVRRDASGCSMLAPLQTGAARFS 89


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,617,871
Number of Sequences: 237096
Number of extensions: 1577135
Number of successful extensions: 3903
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3861
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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