Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0444
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    84   6e-17
Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    27   5.4  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   9.4  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   9.4  
AF153275-1|AAD54940.1|  301|Caenorhabditis elegans transcription...    27   9.4  
AF003145-2|AAB57715.2|  301|Caenorhabditis elegans Runt related ...    27   9.4  
AB027412-1|BAA77765.1|  301|Caenorhabditis elegans RNT-1 protein.      27   9.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 45/87 (51%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
 Frame = +3

Query: 84  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV-TRRLVPN 260
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V T+    +
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 261 QCRIMGYGRAVARIPRVRGGGNHXSGK 341
                G GRAVARIPRVRGGG H SG+
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQ 88



 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 31/63 (49%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +1

Query: 256 QTSAESWGTDVLSPEFLXXXXXXXXXXXR-SFGNMCRGGRMFAPTKPWRRWHRRVNLRQX 432
           Q SAESWGT                   + +FGNMCRGG MFAP K +RRWHR VN+ Q 
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQK 119

Query: 433 RXA 441
           R A
Sbjct: 120 RYA 122


>Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical
           protein Y53C12A.3 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 144 PLPFVFKAPIR-PDLVNDVHVSMSKNSRQPYCVTRRLVPNQCRIMGY 281
           P+P VF   ++ P  V+ V   M KNS+      + + P+Q R+  Y
Sbjct: 364 PMPGVFTPTVKLPCAVDIVKHPMEKNSKSSALHCKIVAPDQTRVFDY 410


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 132 PAPSRSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 31
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 205 ETXTSLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 71
           E   S  R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 561 EIRESEERKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 205 ETXTSLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 71
           E   S  R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 551 EIRESEERKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 175 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 62
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 175 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 62
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/57 (21%), Positives = 24/57 (42%)
 Frame = +3

Query: 69  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 239
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCV 238


>AF153275-1|AAD54940.1|  301|Caenorhabditis elegans transcription
           factor RUN protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -1

Query: 287 TSVPHDSAL-VW---DQPPCHAVRLPRVLGHRNVXIIDQVRTYGR 165
           T VP ++ + +W   D+ PC  VR  +   HR V   + +R  GR
Sbjct: 55  TPVPDNTEVSIWAGNDEKPCEEVRNEKAKVHRQVAKFNDLRFVGR 99


>AF003145-2|AAB57715.2|  301|Caenorhabditis elegans Runt related
           protein 1 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -1

Query: 287 TSVPHDSAL-VW---DQPPCHAVRLPRVLGHRNVXIIDQVRTYGR 165
           T VP ++ + +W   D+ PC  VR  +   HR V   + +R  GR
Sbjct: 55  TPVPDNTEVSIWAGNDEKPCEEVRNEKAKVHRQVAKFNDLRFVGR 99


>AB027412-1|BAA77765.1|  301|Caenorhabditis elegans RNT-1 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -1

Query: 287 TSVPHDSAL-VW---DQPPCHAVRLPRVLGHRNVXIIDQVRTYGR 165
           T VP ++ + +W   D+ PC  VR  +   HR V   + +R  GR
Sbjct: 55  TPVPDNTEVSIWAGNDEKPCEEVRNEKAKVHRQVAKFNDLRFVGR 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,692,851
Number of Sequences: 27780
Number of extensions: 222613
Number of successful extensions: 504
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)