Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0444
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    27   0.11 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 423 EVDATVPAPPGLRGGEHTSTTTHVT 349
           ++D  +P PP +RGGE T  T   T
Sbjct: 370 DLDEPLPPPPPIRGGEWTFDTLRKT 394


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 414 ATVPAPPGLRGGEHTSTTTHVTEG 343
           A+V A PG  G   TST T +  G
Sbjct: 170 ASVKAEPGSTGTTTTSTGTRLLHG 193



 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 377 SPPRSPGGAGT 409
           SPPR PGG  T
Sbjct: 397 SPPRGPGGVPT 407


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 376  TYVHHDTCYRRTLPDXWLPPPR 311
            T +  D   + TL   W PPPR
Sbjct: 981  TSIRVDDLDQHTLKVTWKPPPR 1002


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 221 EAALLRDKEAGPKPVPNHGVRTCCRP 298
           E  +    + G K  PN  VR C  P
Sbjct: 569 EEIINSSNDEGGKTSPNSAVRKCMSP 594


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,104
Number of Sequences: 438
Number of extensions: 2433
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)