Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0443
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   2.0  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   3.5  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   4.7  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    26   4.7  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   4.7  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   8.1  

>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 24/107 (22%), Positives = 45/107 (42%)
 Frame = +3

Query: 159 RRWTLWHRRHPRGFVYPLDLFLYWRHREIKRSLIIDPELDVDKSGFRNFTSLRSKHPDVK 338
           R++T+W     +   + LD+      +E   S  ++  L +       F S+++  P  K
Sbjct: 580 RQFTIWKTEETQRRFHKLDILRQSLKKEENVSESLNEWLAIASELIDEFVSIKAFFPSEK 639

Query: 339 FMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLD 479
              A  G     ++Y+ +  Q +   S I  + D L +  +  LDLD
Sbjct: 640 KARARAGLLTRRTRYASLNDQLT---SMINRLNDSLTRTKYGDLDLD 683


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 211 SGYTN-PRGCLRCHNVQRRVGTPPNY*SNKRCALCCPTELMRRNSPGQPTSQISLAFST- 38
           SGY +  R C RCH+ ++++    N+  + R   C   + +R  S     S     F   
Sbjct: 92  SGYDSYHRECFRCHDCRKQI-IDSNFKRDNRTIFCNDCKQVRHPSRSSDESADYHNFEVD 150

Query: 37  VTVRPCSXRA 8
           VT++P   ++
Sbjct: 151 VTIKPTETKS 160


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 360 WAEGGSKYSHMVAQKSTRMSFIRS-VVDFLKKYDFDGLDLD 479
           W + G   + +  + S   S++       + KYDFDGL +D
Sbjct: 189 WQDSGVLLADLDVESSDVSSYLSDHFKSLISKYDFDGLRID 229


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 321 KHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMS 419
           +HP  KF+V VGG+     ++ H    K T  S
Sbjct: 136 QHPPFKFVVFVGGFRAEKPEFDHFYNPKLTTPS 168


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 399 QKSTRMSFIRSVVDFLKKYDFDGLDLD 479
           +   R  F   V D +K+Y FDG+ LD
Sbjct: 190 KNEVRKFFQNWVSDLIKRYQFDGIRLD 216


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 473 IQTVEVIFLQEVDNASD 423
           + TVE+  LQE++NASD
Sbjct: 223 LDTVELHLLQEIENASD 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,974
Number of Sequences: 5004
Number of extensions: 61538
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)