Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0443
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 40 0.001
04_03_0649 - 18402976-18403220,18403305-18404499 39 0.005
10_08_0011 + 14088375-14089241 33 0.30
10_08_0009 + 14075929-14076789 31 1.2
03_02_0687 + 10413338-10413430,10413538-10413934,10414040-104141... 29 2.8
11_01_0051 + 391254-391343,391460-391862,392345-392352,393627-39... 29 4.8
10_08_0007 + 14044844-14045767 28 6.4
03_06_0754 - 36025579-36027000 28 6.4
03_05_0863 + 28357585-28357635,28357782-28357851,28357987-283580... 28 6.4
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235 28 8.5
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 381 YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 491
+S M ++K+ R +FI S ++ + FDGLDL W +P
Sbjct: 129 FSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 38.7 bits (86), Expect = 0.005
Identities = 26/97 (26%), Positives = 54/97 (55%), Gaps = 12/97 (12%)
Frame = +3
Query: 246 KRSLIIDPELDVDKSGFRNFT-SLRSKHPDVKFMVAVG-GWAEGGSK----------YSH 389
+R+L++ P+ S +F+ ++++K+ VK ++++G G GG+ ++
Sbjct: 78 RRTLLLPPD-PAAASLLGDFSRAVKAKNAAVKTVLSIGRGGGAGGAAAVAGSGSDPAFAA 136
Query: 390 MVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYPGAA 500
M A ++R +FI + V ++ FDGLD+ W +P +A
Sbjct: 137 MAADPASRAAFIGAAVKVARENGFDGLDVAWRFPASA 173
>10_08_0011 + 14088375-14089241
Length = 288
Score = 32.7 bits (71), Expect = 0.30
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 258 IIDPELDVDKSGFRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRS 431
+ P D + ++++ HP+V MV +GG + + + + S + + S
Sbjct: 56 VFSPYWDTANLSPADVAAVKAAHPNVSVMVGLGGDSVQDTAKVFFSPTSVDSWVANAVAS 115
Query: 432 VVDFLKKYDFDGLDLDWEY 488
V + Y DG+D+D+E+
Sbjct: 116 VSGIIDAYGLDGVDVDYEH 134
>10_08_0009 + 14075929-14076789
Length = 286
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 315 RSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVD----FLKKYDFDGLDLDW 482
++ HP++ ++A+GG + + A S+ +++R+ D + Y DG+D+D+
Sbjct: 75 KAAHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGLDGVDVDY 134
Query: 483 EY 488
E+
Sbjct: 135 EH 136
>03_02_0687 +
10413338-10413430,10413538-10413934,10414040-10414168,
10414370-10414517,10414647-10415925
Length = 681
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 506 PVSGTGILPVQIQTVEVIFLQEVDNASDEGHPSALLGHHV*VLGAAF 366
PV GT + V+ V I Q+ + E HP + G+H VL F
Sbjct: 550 PVKGTKLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGF 596
>11_01_0051 +
391254-391343,391460-391862,392345-392352,393627-393704,
395371-395763
Length = 323
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -2
Query: 512 EHPVSGTGILPVQIQTVEVIFLQEVDNASDEGHPSALLGHHV*VLGAAFSPTANRDHELD 333
E PV+GT + ++ + + LQ + + E HP L G+ +L N D D
Sbjct: 192 EKPVAGTKVYKLKYGSAVQVVLQGTNIFAGENHPIHLHGYDFYILAEGL---GNFDAGAD 248
Query: 332 IGVFGAE 312
G F E
Sbjct: 249 TGKFNVE 255
>10_08_0007 + 14044844-14045767
Length = 307
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 309 SLRSKHPDVKFMVAVGGWAEGGSK-YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWE 485
S++ +P+V+ V++GG + ++ + S + + S+ ++ + DG+D+D+E
Sbjct: 95 SIKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQDNNLDGIDIDYE 154
>03_06_0754 - 36025579-36027000
Length = 473
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 259 LSILSW-T*IRVVSVTSHPSAPNTPMSSSWSRLAVGLKA 372
++I SW T +R ++S PS P++ SSSW VG+ A
Sbjct: 1 MAIESWLTKVRSAIISSKPS-PSSSSSSSWRSKTVGILA 38
>03_05_0863 +
28357585-28357635,28357782-28357851,28357987-28358054,
28358757-28358818,28359491-28359572,28359658-28359891,
28360210-28360338,28360430-28360491,28360779-28360896
Length = 291
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 466 VWIWTGSIPVPLTGCSFSD 522
VW+WT S+PV + S SD
Sbjct: 113 VWVWTVSLPVTIVNASDSD 131
>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
Length = 416
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 324 HPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSF 422
+P ++ A GG GG+ YSH A + +F
Sbjct: 93 YPTSHYLAAAGGAGGGGNPYSHFTAAAAAGSTF 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,593,994
Number of Sequences: 37544
Number of extensions: 473514
Number of successful extensions: 1312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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