Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0443
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   4e-14
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              73   3e-13
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              72   4e-13
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              69   5e-12
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   2e-11
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        66   4e-11
SB_15557| Best HMM Match : Cu_amine_oxid (HMM E-Value=0)               31   1.2  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             30   1.6  
SB_46531| Best HMM Match : Cu_amine_oxid (HMM E-Value=0)               30   1.6  
SB_19848| Best HMM Match : DDE (HMM E-Value=7.7)                       29   4.9  
SB_8369| Best HMM Match : CENP-B_N (HMM E-Value=1.6)                   29   4.9  
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  29   4.9  
SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)                 28   6.5  
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)              28   8.6  
SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)                   28   8.6  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
 Frame = +3

Query: 294 FRNFTSLRSKHPDVKFMVAVGGWA-EGG--SKYSHMVAQKSTRMSFIRSVVDFLKKYDFD 464
           ++    L+ K+P +K ++AVGGW  E G  S +S MVA KS R +FI S++    KYDFD
Sbjct: 455 YKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDFD 514

Query: 465 GLDLDWEYPGA 497
           G DLDWEYP +
Sbjct: 515 GFDLDWEYPAS 525



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 18/44 (40%), Positives = 30/44 (68%)
 Frame = +1

Query: 124 VCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEKSSEV 255
           VCYF+NWA YRP   ++  +DI   LCTH++Y+F  +   ++++
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLLCTHIVYAFAKIDPATNKI 444


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
 Frame = +3

Query: 282 DKSGFRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRSVVDFLKKY 455
           D   ++   +L+  +P +K  +AVGGW   E  S +S MVA K  R  FI+S ++ L+ +
Sbjct: 74  DHELYQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTH 133

Query: 456 DFDGLDLDWEYPG 494
            FDGLDLDWEYPG
Sbjct: 134 GFDGLDLDWEYPG 146



 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
 Frame = +3

Query: 294 FRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDG 467
           ++   +L+  +P +K  +AVGGW   E  S +S MVA K  R  FI+S ++ L+   FDG
Sbjct: 463 YKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFDG 522

Query: 468 LDLDWEYPG 494
           LDLDWEYPG
Sbjct: 523 LDLDWEYPG 531



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 25  DEP*PLKMRAIFA-TLAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDL 201
           D P P     I A  LA+L  C          R VCY++NW+ YRP  G +  EDI   L
Sbjct: 376 DGPLPPNTSLIMARVLAILILCFVPFAVSEYVR-VCYYTNWSQYRPKGGTFWPEDIDPHL 434

Query: 202 CTHLIYSF 225
           CTH+I+SF
Sbjct: 435 CTHVIHSF 442



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)
 Frame = +1

Query: 67  LAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEKS 246
           LAVL  CA  V +    R  CY++NW+ YRP  G +  EDI   LCTH+++SF  V + +
Sbjct: 7   LAVLG-CALSVTASEYVR-GCYYTNWSQYRPKGGTFWPEDIDPFLCTHILFSFAKVNQTT 64

Query: 247 SEVSL 261
            ++ +
Sbjct: 65  HKLDI 69


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
 Frame = +3

Query: 282 DKSGFRNFTSLRSKHPDVKFMVAVGGW--AEGGSKYSHMVAQKSTRMSFIRSVVDFLKKY 455
           D   +  F +L+ K+P++K ++AVGGW      S +S MV   +TR  FI SV+  L+ +
Sbjct: 71  DDKLYPRFNALKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTW 130

Query: 456 DFDGLDLDWEYP 491
            FDGLDLDWEYP
Sbjct: 131 GFDGLDLDWEYP 142



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 64  TLAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEK 243
           TL VLA  A    +  R   VCY +NW+ YR G  ++  EDIP DLCTHL+YSF  + +K
Sbjct: 5   TLLVLAVAACATGNYVR---VCYHTNWSQYRQGRAKFWPEDIPADLCTHLMYSFAKINQK 61

Query: 244 SSEVSLSILSW 276
           +    L++  W
Sbjct: 62  N---ELAMYEW 69


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
 Frame = +3

Query: 282 DKSGFRNFTSLRSKHPDVKFMVAVGGWAEGGSK--YSHMVAQKSTRMSFIRSVVDFLKKY 455
           D   ++ F  L+ K+P +K ++AVGGW     K  +S MV   ++R  FI S +  L+++
Sbjct: 183 DDKLYKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQW 242

Query: 456 DFDGLDLDWEYPG 494
           +FDG DLDWEYPG
Sbjct: 243 NFDGFDLDWEYPG 255


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 31/72 (43%), Positives = 44/72 (61%)
 Frame = +3

Query: 282 DKSGFRNFTSLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDF 461
           D + ++    L+S   ++K ++AVGGW  G   +  MV+  S R  FI   + FL+ + F
Sbjct: 74  DAAMYKKVNDLKSSS-NMKTLLAVGGWNMGSGPFQDMVSTASRRKIFIDDAILFLRNHMF 132

Query: 462 DGLDLDWEYPGA 497
           DGLDLDWEYPGA
Sbjct: 133 DGLDLDWEYPGA 144



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 24/65 (36%), Positives = 42/65 (64%)
 Frame = +1

Query: 67  LAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEKS 246
           L +L   ++L  S S  R VCY++NWA YR G+ +Y  ++I   LCTH++Y+F  +   +
Sbjct: 7   LPLLVVPSSLFASASYFR-VCYYTNWAQYR-GLAKYTPDNIDPSLCTHIVYAFAKMNADN 64

Query: 247 SEVSL 261
           S++++
Sbjct: 65  SKLAM 69


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 30/68 (44%), Positives = 42/68 (61%)
 Frame = +3

Query: 294 FRNFTSLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLD 473
           ++    L+S   ++K ++AVGGW  G   +  MV+  S R  FI   + FL+ + FDGLD
Sbjct: 2   YKKVNDLKSSS-NMKTLLAVGGWNMGSGPFQDMVSTASRRKIFIDDAILFLRNHMFDGLD 60

Query: 474 LDWEYPGA 497
           LDWEYPGA
Sbjct: 61  LDWEYPGA 68


>SB_15557| Best HMM Match : Cu_amine_oxid (HMM E-Value=0)
          Length = 1009

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 165 WTLWHRRHPRGFVYPLDLFLYWRH 236
           W  +HR HP  FVYPL   +Y  H
Sbjct: 477 WYAFHRDHPPMFVYPLPFEIYIDH 500


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +1

Query: 202  CTHLIYSFIGVTEKSSEVSLSIL-SWT*IRVVSVTSHPSAPNTPMSSSWSRLAVGLKAAP 378
            C+    +   +T  S+ ++ SIL S T     S+   P+    P+  +W+     L   P
Sbjct: 1318 CSQWGMAITRITLISNAITFSILASHTSFGTESLAPSPTPSKEPLGGTWANTRSSLTTTP 1377

Query: 379  STHTWWPRRALGCPSSEALSTS*RNMTST 465
            S  T     A   P+S  +S + +N TS+
Sbjct: 1378 SFPTTSLMLAPVTPASLIISQATKNATSS 1406


>SB_46531| Best HMM Match : Cu_amine_oxid (HMM E-Value=0)
          Length = 900

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 165 WTLWHRRHPRGFVYPLDLFLYWRH 236
           W  +HR HP  FVYPL   +Y  H
Sbjct: 314 WYAFHRDHPPLFVYPLPFEIYIDH 337


>SB_19848| Best HMM Match : DDE (HMM E-Value=7.7)
          Length = 284

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 570 LMNASLTLGRIQELVFIGEGAPGQRHRDTPSPD 472
           L  A L LG  + +VFI +GAP  R+   P P+
Sbjct: 153 LTQARLNLGPDEIMVFIYDGAPPHRNPAVPGPN 185


>SB_8369| Best HMM Match : CENP-B_N (HMM E-Value=1.6)
          Length = 427

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 570 LMNASLTLGRIQELVFIGEGAPGQRHRDTPSPD 472
           L  A L LG  + +VFI +GAP  R+   P P+
Sbjct: 296 LTQARLNLGPDEIMVFIYDGAPPHRNPAVPGPN 328


>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = -2

Query: 479 VQIQTVEVIFLQEVDNASDEGHPSALLGHHV*VLGAAFSPTANRDH--ELD-IGVFGAEG 309
           + I T  V F  E D AS  G  +   G      G  +S   +R+H   L+ +G F A  
Sbjct: 518 LSIVTSNVDFTSESD-ASMLGWGACCNGQST---GGLWSEVESRNHINYLETLGAFFALK 573

Query: 308 CEVTETTLIYVQLRIDNETSLDF 240
           C   + T  ++QL++DN T++ +
Sbjct: 574 CFARDVTCKHIQLKLDNTTAVSY 596


>SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)
          Length = 683

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 570 LMNASLTLGRIQELVFIGEGAPGQRHRDTPSPD 472
           L  A L L   + ++FI +GAP  R+ D P P+
Sbjct: 615 LTQARLNLDPDEMVIFIYDGAPPHRNPDIPGPN 647


>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 95   NAAQLARTANV-ANIARIFNGYGSSV 21
            N+ Q AR A+  A+IA +FNGY SSV
Sbjct: 1439 NSTQPARLASTPASIASLFNGYFSSV 1464


>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
          Length = 1027

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 344 HELDIGVFGAEGCEVTETTLIYVQLRIDNETSLDFSVTP 228
           H  D+G F  E C+V   +L  ++  +D ET    SVTP
Sbjct: 483 HRSDVG-FSGETCDVLHHSLDLLRDLVDIETVTQSSVTP 520


>SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)
          Length = 660

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 95  NAAQLARTANV-ANIARIFNGYGSSV 21
           N+ Q AR A+  A+IA +FNGY SSV
Sbjct: 350 NSTQPARLASTPASIASLFNGYFSSV 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,881,500
Number of Sequences: 59808
Number of extensions: 517101
Number of successful extensions: 1284
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)