Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0443
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 385 HTWWPRRALGC 417
           HTWWP   L C
Sbjct: 163 HTWWPYDILNC 173


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 370 PSAQPPTATMNLTSGCLERRDVKL 299
           P  QPP+A  NLT   +++  V L
Sbjct: 313 PCTQPPSAPQNLTVNFVDQSTVFL 336


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 352 LAVGLKAAPSTHTWW 396
           LAVGL A  +   WW
Sbjct: 11  LAVGLGAGQNNKGWW 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,417
Number of Sequences: 438
Number of extensions: 4023
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)