Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0443
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    61   8e-10
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si...    58   4e-09
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si...    57   1e-08
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si...    54   1e-07
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si...    52   5e-07
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si...    51   7e-07
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si...    50   2e-06
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si...    44   8e-05
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si...    40   0.002
At5g53510.1 68418.m06650 oligopeptide transporter OPT family pro...    30   1.3  
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f...    30   1.3  
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea...    29   4.0  
At5g09540.1 68418.m01105 DNAJ heat shock N-terminal domain-conta...    28   5.3  
At1g54610.1 68414.m06228 protein kinase family protein contains ...    28   5.3  
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ...    28   7.1  
At1g24300.1 68414.m03066 GYF domain-containing protein contains ...    28   7.1  

>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
 Frame = +3

Query: 294 FRNFT-SLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGL 470
           F  FT +++ ++P VK ++++GG     + Y+ M +  ++R SFI S +   + Y F GL
Sbjct: 76  FSTFTQTVQRRNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGL 135

Query: 471 DLDWEYPGAA 500
           DLDWEYP +A
Sbjct: 136 DLDWEYPSSA 145


>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 398

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = +3

Query: 282 DKSGFRNFT-SLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYD 458
           +++ F  FT +++ ++P VK ++++GG       ++ M +   +R SFI+S +   + Y 
Sbjct: 51  NQAPFHAFTETVQQRNPHVKTLLSIGGGNADKDAFASMASNPDSRASFIQSTITVARSYG 110

Query: 459 FDGLDLDWEYP 491
           F GLDLDWEYP
Sbjct: 111 FHGLDLDWEYP 121


>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 363

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
 Frame = +3

Query: 294 FRNFTSL-RSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGL 470
           F NFT + + K+P V+ ++++GG     S ++ M +  ++R SFI S +   + Y FDGL
Sbjct: 65  FSNFTKIVKKKNPHVQTLLSIGGRNADKSAFASMASNPTSRKSFIWSAISSARYYRFDGL 124

Query: 471 DLDWEYP 491
           DL W+YP
Sbjct: 125 DLVWKYP 131


>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 365

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
 Frame = +3

Query: 294 FRNFT-SLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGL 470
           F +FT +++ K+ DV+ ++++GG     +  + M +    R +FI S +D  +K DF GL
Sbjct: 72  FSSFTETVKEKNTDVQTLLSIGGKDADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGL 131

Query: 471 DLDWEYP 491
           DL WEYP
Sbjct: 132 DLAWEYP 138


>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 362

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
 Frame = +3

Query: 300 NFT-SLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDL 476
           +FT +++ K+ DV+ ++++GG     +  + M +    R +FI S +D  +K DF GLDL
Sbjct: 66  SFTHTVKDKNTDVQTLLSIGGKDADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDL 125

Query: 477 DWEYP 491
            WEYP
Sbjct: 126 AWEYP 130


>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 366

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
 Frame = +3

Query: 282 DKSGFRNFT-SLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYD 458
           +K  F  FT ++R ++P VK ++++GG       ++ M +  ++R  FI S +   +   
Sbjct: 70  NKPKFSTFTQTVRRRNPTVKTLLSIGGDFTYNFAFASMASNPTSRKLFISSSIKLARSCG 129

Query: 459 FDGLDLDWEYPG-AADXXXXXXXXXXXXXXXELKRRSSEPVKMELTAA 599
           F GLDL+W+YP    +               E + RSS   ++ LTAA
Sbjct: 130 FHGLDLNWKYPSITTEMDNFGKLLREWRLAVEAEARSSGKPRLLLTAA 177


>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 332

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
 Frame = +3

Query: 294 FRNFT-SLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGL 470
           F  FT +++ ++P VK ++++GG     S ++ M +   +R +FI S +   +   F GL
Sbjct: 67  FSTFTETVKIRNPQVKTLLSIGGKNANNSAFASMASNHQSRKTFIDSWIFIARSNGFHGL 126

Query: 471 DLDWEYP 491
           DL WEYP
Sbjct: 127 DLAWEYP 133


>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 261

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = +3

Query: 390 MVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 491
           M +    R SFI S +   + Y FDGLDLDWEYP
Sbjct: 1   MASSSYGRKSFILSTISIARSYGFDGLDLDWEYP 34


>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 289

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +3

Query: 375 SKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 491
           S ++ +V+ +++R SFI S +   +   F GLDL WEYP
Sbjct: 74  STFTEIVSNRTSRESFISSSISIARSLGFYGLDLAWEYP 112


>At5g53510.1 68418.m06650 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 741

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 400 WATMCEYLEPPSAQPPTATMNLTSG 326
           WAT+  YL  P A P  AT+N+T G
Sbjct: 272 WATISSYLGSPLASPLFATINVTIG 296


>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc
           finger (ZZ type) family protein contains Pfam profiles
           PF02135: TAZ zinc finger, PF00569: Zinc finger, ZZ type
          Length = 1706

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 307 HPSAPNTPMSSSWSRLAVGLKAAPSTHTWWPRRA 408
           HP    +  S+S+S LAVG+K+  S    WP ++
Sbjct: 534 HPQNIGSDSSNSFSNLAVGVKSESSPQGQWPSKS 567


>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to WDR protein, form B (GI:14970593) [Mus
           musculus]
          Length = 1589

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
 Frame = -3

Query: 712 GLYKR*HREPXLREYRHHVIRQST--QSVIYPHQLN*QRSAAVSSIF--------TGSDE 563
           G +++ HR P +    H + + ST  Q +    +L   R+A   +IF        TGSD+
Sbjct: 267 GGFRKHHRAPSILSACHAIAKPSTMVQKMQNIKKLRGHRNAVYCAIFDRSGRYVITGSDD 326

Query: 562 RLFNSWT-NTRTCL 524
           RL   W+  T  CL
Sbjct: 327 RLVKIWSMETALCL 340


>At5g09540.1 68418.m01105 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 280

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 340 SWSRLAVGLKAAPSTHTWWPRRALGCPSSEALSTS*RNMTST 465
           SW+   VGL + P+T  W P   L   + ++ S    N+ +T
Sbjct: 223 SWAMFPVGLTSHPNTSNWSPISHLSVCTGQSSSDQQSNLKAT 264


>At1g54610.1 68414.m06228 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 572

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 355 AVGLKAAPSTH---TWWPRRALGCPSSEALSTS*RNMTSTVWIWTGSIPVPLTGCSFSDK 525
           A+G+    S H   T+ PR  +   +S + + S     + V  W+G +  P+TG S   K
Sbjct: 499 AMGVPLGASQHIDPTFIPRDMVPSFTSSSFNFSKDEPPTQVQTWSGPLGHPITGVSRKKK 558

Query: 526 DKFLYSSKS*RGV 564
           D    SSK  R V
Sbjct: 559 DN-TKSSKGKRAV 570


>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
           putative similar to GI:7159943 from [Mus musculus] (RNA
           6 (4), 638-650 (2000))
          Length = 295

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 603 GRQQSAPSLPALMNASLTLGRIQELVFIGEGAPGQR 496
           G  +SAP + A +N +   GR++  VFIG+G  G R
Sbjct: 184 GNTESAP-VAARVNVTGLNGRMKRSVFIGQGVRGGR 218


>At1g24300.1 68414.m03066 GYF domain-containing protein contains
           Pfam profile: PF02213 GYF domain
          Length = 1417

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 437 DNASDEGHPSALLGHHV*VLGAAFS-PTANRDHELDIGVFGA 315
           DN S + + S LLG H   LGAA S P  N       G FGA
Sbjct: 299 DNGSMKNNDSGLLGSHNGGLGAASSVPRLNSVASESYGSFGA 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,708,561
Number of Sequences: 28952
Number of extensions: 345488
Number of successful extensions: 916
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)