Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0442
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    41   2e-04
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    41   2e-04
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   3.5  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   3.5  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   3.5  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   4.6  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    26   6.0  

>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 28/96 (29%), Positives = 51/96 (53%)
 Frame = +1

Query: 274 GVKITDEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMP 453
           G ++T+    ++ S   LGALLG      L +  GR+  I ++S   I+G+I+   +   
Sbjct: 121 GHELTNGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHL 180

Query: 454 VVMYLARFLMGASTGVIAGFSVTMIYVTEIADKEIR 561
             M + RF++G   G+ +   +  +Y++EIA  +IR
Sbjct: 181 WHMIVGRFVIGWGVGIAS--LIIPLYLSEIAPSKIR 214


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 22/96 (22%), Positives = 50/96 (52%)
 Frame = +1

Query: 274 GVKITDEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMP 453
           G  ++  Q   + S     AL+ +     L + VGR++ +  + A  ++G++++  S+  
Sbjct: 114 GHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNV 173

Query: 454 VVMYLARFLMGASTGVIAGFSVTMIYVTEIADKEIR 561
            +M + RF++G   G+ +   +  +Y+TE+A   +R
Sbjct: 174 AMMVVGRFIVGYGIGLTS--LIVPMYITELAPARLR 207


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 51  WKLVIRHLYSHSQSHYKYCF 110
           W L   HLY +S ++Y Y F
Sbjct: 669 WYLQFSHLYGYSATYYSYIF 688


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 507 GNYARRRPHEKTCKVHHNRHFTKKYHNRT*YSWGRRNKN 391
           G++ R  P+      HH RH T  YH++    + RR ++
Sbjct: 150 GSHRRHEPYRTHLSRHH-RHSTTNYHSKRDDRYERRREH 187


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
 Frame = +1

Query: 259 SSGERGVKITDEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILG-AIMI 435
           +SG+  V++T   ++      G  A+L +Y G  ++  +     I ++  P + G  + +
Sbjct: 389 ASGKELVRVTHVFVTIFAVCMGALAVLFNYIGITISWII---TFIGIALGPAVFGITLTL 445

Query: 436 FFSKMPVVMYLARFLMGASTGVIAGFSVTMIYVTEIADKEIRAH*YDNSVMNNFGCLS 609
           F+ KM     +    MG+ TGV+        +   + +K      Y N+V N  G  S
Sbjct: 446 FWKKMNKYGMIIGCPMGSITGVVCWVGSCYKFSNGVVNKTTLNTPYANAVGNFTGLFS 503


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 161 KRKVQYFAGICASLTF 208
           KRK+Q+F G CA  TF
Sbjct: 113 KRKLQFFPGTCAGPTF 128


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 442  SKMPVVMYLARFLMGASTGVIAGFSVTMIYVTEIADKEIRAH*YDNSVMNNFGCLS 609
            S++P+   L   L      V+A   V M+   E + KE R H +DN + +++  L+
Sbjct: 1011 SRLPINPKLPDILQEEINNVVA--EVDMLKKQEASLKEERTHLFDNYISHSYDLLA 1064


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,382
Number of Sequences: 5004
Number of extensions: 63481
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)