Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0442
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    60   2e-09
SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)                 46   2e-05
SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)                  46   3e-05
SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)                     37   0.014
SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)              36   0.042
SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)                36   0.042
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)                32   0.52 
SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_55040| Best HMM Match : TatC (HMM E-Value=0.59)                     31   1.2  
SB_53613| Best HMM Match : Sugar_tr (HMM E-Value=0.00012)              30   1.6  
SB_15338| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_54679| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_24331| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.086)         29   2.8  
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)                     29   2.8  
SB_26686| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
 Frame = +1

Query: 241 ASDSKLSSGERGVKITDEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGIL 420
           A +  ++  +  VK+T  Q SW  SL  LGA+LG+  G    E  GR+ TI   + P  +
Sbjct: 68  ALEDLIAESKESVKLTVSQGSWFSSLVTLGAILGAPLGGWTLEYFGRKGTIMACAVPFEV 127

Query: 421 GAIMIFFSKMPVVMYLARFLMGASTGVIAGFSVTM-IYVTEIADKEIR 561
           G ++I ++    ++Y+ RF+ G + G++   S+T+ +Y+ EI+   +R
Sbjct: 128 GWMLIAYANSHYMLYIGRFITGLAVGMV---SLTVPVYIAEISSPSLR 172


>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
          Length = 456

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 26/85 (30%), Positives = 47/85 (55%)
 Frame = +1

Query: 292 EQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLA 471
           ++I+W  SL  +GA+LG      L + +GR+  + ++S P   G ++I F K   ++   
Sbjct: 81  DEITWFGSLLNIGAMLGGPIQGFLIDLIGRKFALILTSVPFCSGWLLIGFGKNAAMLNAG 140

Query: 472 RFLMGASTGVIAGFSVTMIYVTEIA 546
           RF+ G   G +A  +V  +Y++E A
Sbjct: 141 RFMSGLGVG-MASLNVP-VYISETA 163


>SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)
          Length = 201

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/95 (26%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
 Frame = +1

Query: 334 LLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIF---FSKMPVVMYLARFLMGASTGVI 504
           ++G+  G L   R GR++++  ++   I+GA+++F   F+K   ++ + RF++G + G+ 
Sbjct: 1   MIGALAGPLFANRFGRKRSLLANNGLAIVGALLMFLSYFAKTSPLLTVGRFVIGINCGM- 59

Query: 505 AGFSVTMIYVTEIADKEIRAH*YDNSVMNNFGCLS 609
              ++  IY++E+A   +R        +N FG +S
Sbjct: 60  -NTAIAPIYLSELAPIHLRG---SLGTLNQFGIVS 90


>SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 493

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = +1

Query: 331 ALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTGVIAG 510
           A++G+  G +LN+ +GR+  + + S     GA+++  +    V+ + R ++G   G   G
Sbjct: 100 AIVGAVLGGILNDSLGRKPVLVLCSGVFTAGAVVMGVAGTKHVLLVGRLVIGLGIG---G 156

Query: 511 FSVTM-IYVTEIADKEIR 561
            S+T+ IYV E A   +R
Sbjct: 157 ASMTVPIYVAEAAPSSMR 174


>SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)
          Length = 468

 Score = 35.5 bits (78), Expect = 0.042
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = +1

Query: 328 GALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTGVIA 507
           G L+GS  G   ++R GRR  + V SA   + +   FF+  P ++ L RF  G    + +
Sbjct: 124 GMLIGSLVGGWASDRFGRRLCLLVGSAIMTILSFGTFFADCPSLLALLRF--GVGFALAS 181

Query: 508 GFSVTMIYVTEIADKEIR 561
                 +YV E+   + R
Sbjct: 182 VMVCQYVYVIELVGPKAR 199


>SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 968

 Score = 35.5 bits (78), Expect = 0.042
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = +1

Query: 328 GALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTGVIA 507
           G L+GS  G   ++R GRR  + V SA   + +   FF+  P ++ L RF  G    + +
Sbjct: 637 GMLIGSLVGGWASDRFGRRLCLLVGSAIMTILSFGTFFADCPSLLALLRF--GVGFALAS 694

Query: 508 GFSVTMIYVTEIADKEIR 561
                 +YV E+   + R
Sbjct: 695 VMVCQYVYVIELVGPKAR 712


>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
          Length = 544

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = +1

Query: 298 ISWVV-SLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLAR 474
           +SW   S+   G L G+    +L+++ GRRK +F+SS      A    F     +  + R
Sbjct: 92  LSWATNSIMFTGWLFGNIVFGILSDKYGRRKVLFISSCMVCWVAFASSFVPYYWLYAVFR 151

Query: 475 FLMGASTGVIAGFSVTMIYVTEIADKEIRA 564
           F +G   G      +  I  TE    + RA
Sbjct: 152 FFIGFGLG--GSIVILFIMATEFVGPQKRA 179


>SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 636

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 334 LLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTG--VIA 507
           + G+  G +++++ GR+  +F       L  +   F+    V  L R L+GA  G   I 
Sbjct: 265 IFGAMAGSIISDKFGRKIVVFPCVIFASLCGLASAFANKYWVFALFRALLGAGIGGYSIC 324

Query: 508 GFSVTMIYV 534
           GF + M Y+
Sbjct: 325 GFVLVMEYI 333


>SB_55040| Best HMM Match : TatC (HMM E-Value=0.59)
          Length = 275

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 328 GALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGAST 495
           G L+GS    L+++  GR+K  ++S A  ++  +   F          RF++GA T
Sbjct: 121 GMLIGSLVSGLISDAWGRKKCFYLSYALMVVAGVSCVFVDCISFFAFLRFVVGAGT 176


>SB_53613| Best HMM Match : Sugar_tr (HMM E-Value=0.00012)
          Length = 466

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +1

Query: 313 SLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLA--RFLMG 486
           S++ +G L GS+   ++++  GR+  +F+ +  GI+ A  +  + +  V + A  RFL+G
Sbjct: 115 SVYFIGMLFGSFLTGMVSDAWGRKNCLFLFT--GIMLAAGVASALVDCVSFFAFLRFLVG 172

Query: 487 ASTGVIAGFSVTMIYVTEIADKEIR 561
              G+        IY+TEI   + R
Sbjct: 173 --FGLSGAMLSQFIYLTEIVGPKRR 195


>SB_15338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
 Frame = +3

Query: 54  KLVIRHLYSHSQSHYK------YCFGISVTF*LQSVKWPNPQREKCNILREF 191
           K+ +  L SH +  YK        FG S T  +  +  P+P   KCN  R+F
Sbjct: 72  KVFVNSLLSHIRVSYKSTYVSVVLFGTSATIDINYIFNPHPNNHKCNFRRDF 123


>SB_54679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = +1

Query: 289 DEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYL 468
           + + +W+ S+ G    L       L +R G R   F+     +LG  +  F + P  MY+
Sbjct: 61  EAESAWIGSVAGSLNFLCGPVASFLCDRYGCRSVAFIGGILSVLGLFLTSFVQNPGKMYV 120

Query: 469 ARFLMGASTGVIAGFSVT 522
                G   GV +G S T
Sbjct: 121 T---YGLLWGVGSGLSFT 135


>SB_24331| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.086)
          Length = 444

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +1

Query: 325 LGALLGSYGGQLLNERVGRRKTIFVSSAPGIL-GAIMIFFSKMPVVMYLARFLMGASTGV 501
           +GAL+G   G L+  R+G    + +    G+L GA+M   + M V+M +   LMG  TGV
Sbjct: 9   MGALMGVLMGVLMGVRMGVLMGVLIGVLIGVLMGALM--GALMGVLMGV---LMGVLTGV 63

Query: 502 IAG 510
           + G
Sbjct: 64  LMG 66



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +1

Query: 325 LGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTGVI 504
           +G L+G   G L+  R+G R  + +S   G+L  +++      ++  L    MG   GV+
Sbjct: 77  MGVLMGVLMGVLMGVRMGVRMGVLMSVLMGVLMGVLMGVLMGVLMGVLMGVRMGVRMGVL 136

Query: 505 AG 510
            G
Sbjct: 137 MG 138


>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
          Length = 509

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 328 GALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGAST 495
           G +LGS     L++R+GR+K    S+   ++ +    F   P      RF++G ST
Sbjct: 111 GMVLGSLISGNLSDRLGRKKWCLYSAIILLISSTSSSFVDCPSFFAFLRFVVGMST 166


>SB_26686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 1/129 (0%)
 Frame = +1

Query: 175 IFCGNLCLINIYVYWSNISVAFASDSKLSSGERGVKITDEQISWVVSLH-GLGALLGSYG 351
           I C    ++N  V+  + S      + L      +K+   + +W+ ++  GL  L G   
Sbjct: 41  IVCAGTFIVNFIVFGIHNSFGVVYVNLLDE----LKLGKAETAWIGAMAMGLNFLCGPLT 96

Query: 352 GQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTGVIAGFSVTMIY 531
             +L  R   + T F+ +   +LG  +  F + P  MYL   L+    G    F  +++ 
Sbjct: 97  S-ILCTRYSCQATAFIGALLSVLGLFLTSFVQEPPKMYLTYGLL-FGVGSSLSFVSSIVI 154

Query: 532 VTEIADKEI 558
           + E   K +
Sbjct: 155 LGEYFQKRL 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,516,214
Number of Sequences: 59808
Number of extensions: 479132
Number of successful extensions: 1345
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)