Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0442
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical ... 49 4e-06
AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical ... 46 2e-05
Z81099-3|CAB03186.3| 490|Caenorhabditis elegans Hypothetical pr... 45 6e-05
U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical pr... 42 6e-04
Z99270-1|CAB16470.4| 500|Caenorhabditis elegans Hypothetical pr... 40 0.002
U12965-9|AAA20605.3| 522|Caenorhabditis elegans Hypothetical pr... 36 0.021
U12965-7|AAY86205.1| 528|Caenorhabditis elegans Hypothetical pr... 36 0.021
AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical ... 36 0.028
Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical pr... 35 0.049
U28735-4|AAF99953.1| 488|Caenorhabditis elegans Hypothetical pr... 35 0.065
Z66522-7|CAA91409.2| 472|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z66520-13|CAA91392.2| 472|Caenorhabditis elegans Hypothetical p... 33 0.26
Z66567-7|CAC42386.3| 414|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical pr... 32 0.46
AF199013-1|AAG28557.1| 414|Caenorhabditis elegans organic catio... 32 0.46
Z83113-3|CAB05545.1| 479|Caenorhabditis elegans Hypothetical pr... 31 0.61
AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical ... 31 0.61
U10438-3|AAA19082.2| 242|Caenorhabditis elegans Drosophila odd-... 29 2.4
AF016679-6|AAB66156.1| 490|Caenorhabditis elegans Hypothetical ... 29 2.4
AF098996-4|AAC68705.1| 888|Caenorhabditis elegans Hypothetical ... 29 3.2
Z71262-4|CAA95814.1| 775|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF098996-2|AAC68711.3| 431|Caenorhabditis elegans Hypothetical ... 29 4.3
Z92796-4|CAB63231.1| 516|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z79602-1|CAB01888.3| 508|Caenorhabditis elegans Hypothetical pr... 28 5.7
U56964-6|AAB54035.1| 848|Caenorhabditis elegans Hypothetical pr... 28 5.7
AL110479-6|CAB54354.2| 447|Caenorhabditis elegans Hypothetical ... 28 5.7
Z99281-14|CAB16524.1| 532|Caenorhabditis elegans Hypothetical p... 28 7.5
U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone... 28 7.5
U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone... 28 7.5
U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone... 28 7.5
AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear recep... 28 7.5
AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear recep... 28 7.5
AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear recep... 28 7.5
AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear recep... 28 7.5
>AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical
protein C35A11.4 protein.
Length = 515
Score = 48.8 bits (111), Expect = 4e-06
Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Frame = +1
Query: 301 SWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSK-MPVV-MYLA- 471
S+VV++ LGAL GS+ +L+ + +GR+ +++S A G+L M SK +P+ +Y+A
Sbjct: 64 SFVVAILFLGALAGSFSIRLIADWIGRKNGLYISIAVGVLAGGMSIASKFIPLFELYIAS 123
Query: 472 RFLMGASTGVIAGFSVTMIYVTEIADKEIR 561
R +MG S V G S ++++E + K+ R
Sbjct: 124 RIVMGWSVSVSLGLSA--LFLSEASPKQNR 151
>AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical
protein R09B5.11 protein.
Length = 516
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/91 (27%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Frame = +1
Query: 301 SWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKM----PVVMYL 468
S VS+ +G + GS+ L ++ GR+ T+ ++ +L A+ + SK+ P++++
Sbjct: 101 SVAVSMFSVGGMFGSFCSGFLADKFGRKSTLLYNNILALLAAVCLSTSKLFNFYPMIVF- 159
Query: 469 ARFLMGASTGVIAGFSVTMIYVTEIADKEIR 561
RFL+G + G+ +G + +++TE+A +R
Sbjct: 160 GRFLVGLNCGITSG--LVPMFLTELAPANLR 188
>Z81099-3|CAB03186.3| 490|Caenorhabditis elegans Hypothetical
protein K08F9.1 protein.
Length = 490
Score = 44.8 bits (101), Expect = 6e-05
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Frame = +1
Query: 301 SWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSK-MPV--VMYLA 471
S+VV++ LGAL GS+ + E VGR+ +++S + G+L M SK +P+ + ++
Sbjct: 64 SFVVAVLFLGALAGSFSIPFIAEGVGRKNGLYISISVGVLAGGMSIASKFIPLFELYIIS 123
Query: 472 RFLMGASTGVIAGFSVTMIYVTEIADKEIR 561
R +MG S V G S I+++E + K+ R
Sbjct: 124 RVVMGWSVSVSLGLS--GIFLSEASPKQNR 151
>U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical
protein F53H8.3 protein.
Length = 569
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Frame = +1
Query: 301 SWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSK---MPVVMYLA 471
S+VVS +GA+LG+ +++ E+ GRR +F + + A+ +K P ++
Sbjct: 60 SFVVSSIAIGAILGASFTRIIGEKYGRRNGMFFNGILNVFAALFELVAKRFSSPELLIFG 119
Query: 472 RFLMGASTGVIAGFSVTMIYVTEIADKEIR 561
RF+ G + G+ +G + +Y+ EI + R
Sbjct: 120 RFVYGINMGLSSG--LVPMYLMEITPYKYR 147
>Z99270-1|CAB16470.4| 500|Caenorhabditis elegans Hypothetical
protein Y37A1A.3 protein.
Length = 500
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Frame = +1
Query: 232 VAFASDSKLSSGERGVKITDEQISW--VVSLHGLGALLGSYGGQLLNERVGRRKTIFVSS 405
+ F + SK S+ +++ + W +V++ LG+ G++ + + ER GR+K + VS
Sbjct: 54 IKFLNASKHSNNPDDNELSHLENEWSFIVAIFFLGSATGAFLIKTVAERFGRKKGVIVSL 113
Query: 406 APGILGA---IMIFFSKMPVVMYLARFLMGASTGVIAGFSVTMIYVTE 540
+ + I+ F+ ++ ARFLMG G+ + ++VTE
Sbjct: 114 FAQVTSSMLTIVSFWIVNHILFIFARFLMG--VGITISMGIAAMFVTE 159
>U12965-9|AAA20605.3| 522|Caenorhabditis elegans Hypothetical
protein F23F12.3 protein.
Length = 522
Score = 36.3 bits (80), Expect = 0.021
Identities = 26/96 (27%), Positives = 43/96 (44%)
Frame = +1
Query: 274 GVKITDEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMP 453
G K D +W+ ++ +GAL+G+ L + GR+ FV + GI+ + F+
Sbjct: 90 GTKAYDS--AWIATIQFIGALVGALVYGHLGDHFGRKPVSFVGISIGIIFGVASGFAPSW 147
Query: 454 VVMYLARFLMGASTGVIAGFSVTMIYVTEIADKEIR 561
V + F+ G S I V Y+ E + E R
Sbjct: 148 EVFAVLLFICGTSVACI--MIVFYAYILEFIEPEQR 181
>U12965-7|AAY86205.1| 528|Caenorhabditis elegans Hypothetical
protein F23F12.13 protein.
Length = 528
Score = 36.3 bits (80), Expect = 0.021
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +1
Query: 301 SWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFL 480
+WV ++ +G L+G+ L + GR+ F + GIL + F+ V RF+
Sbjct: 97 AWVATIQFIGVLIGAITYGHLGDHFGRKPVSFFGISVGILFGVASGFAPSWEVFAAFRFI 156
Query: 481 MGASTGVIAGFSVTMIYVTEIADKEIR 561
+G S I V Y+ E + E R
Sbjct: 157 VGTSIASI--LIVFYAYILEFIEPEQR 181
>AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical
protein Y51A2D.4 protein.
Length = 606
Score = 35.9 bits (79), Expect = 0.028
Identities = 23/85 (27%), Positives = 44/85 (51%)
Frame = +1
Query: 307 VVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMG 486
+VS+ A +GS ++ +GRRK I +SA +GA++ S +++ + R L+G
Sbjct: 70 LVSISPGMAAVGSLMSGTSSDYIGRRKVILGASAIFTIGALVCAASVNKIMLLVGRVLLG 129
Query: 487 ASTGVIAGFSVTMIYVTEIADKEIR 561
+ G + + +Y+ E A +R
Sbjct: 130 IAIGFAS--MIVPVYLGETAPTHVR 152
>Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical
protein M01F1.5 protein.
Length = 604
Score = 35.1 bits (77), Expect = 0.049
Identities = 23/85 (27%), Positives = 44/85 (51%)
Frame = +1
Query: 307 VVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMG 486
+VS+ A +GS ++ +GR+K I +S +GAI+ + +++ + R L+G
Sbjct: 73 IVSITPGVAAIGSLCSGPGSDFLGRKKIIIGASVTFTIGAIICAAAWTKIILLIGRILLG 132
Query: 487 ASTGVIAGFSVTMIYVTEIADKEIR 561
+ G + + IYV+E + IR
Sbjct: 133 LAIGFAS--MIVPIYVSEASPSHIR 155
>U28735-4|AAF99953.1| 488|Caenorhabditis elegans Hypothetical
protein F48E3.2 protein.
Length = 488
Score = 34.7 bits (76), Expect = 0.065
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +1
Query: 301 SWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFS---KMPVVMYLA 471
S +++++ +G GS + +R+GR+ T+F+ + +L +++ F+ KMP++ +
Sbjct: 61 SAMLAIYFIGFAAGSVISAGVADRIGRKWTLFLGTCGSLLSSLIALFAIILKMPLMFGFS 120
Query: 472 RFLMGASTGV 501
R +M S +
Sbjct: 121 RLVMSLSAAI 130
>Z66522-7|CAA91409.2| 472|Caenorhabditis elegans Hypothetical
protein F14E5.1 protein.
Length = 472
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 283 ITDEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAI-MIFFSKMPVV 459
+ E W + GL + G+ G ++ E+VGRRK + + + L I +FF+K+ ++
Sbjct: 302 VESEIAEWSTTAMGLAYVSGTITGGIVIEKVGRRKLLLLFTFLNNLALIAFVFFAKIRIL 361
Query: 460 M 462
+
Sbjct: 362 I 362
>Z66520-13|CAA91392.2| 472|Caenorhabditis elegans Hypothetical
protein F14E5.1 protein.
Length = 472
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 283 ITDEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAI-MIFFSKMPVV 459
+ E W + GL + G+ G ++ E+VGRRK + + + L I +FF+K+ ++
Sbjct: 302 VESEIAEWSTTAMGLAYVSGTITGGIVIEKVGRRKLLLLFTFLNNLALIAFVFFAKIRIL 361
Query: 460 M 462
+
Sbjct: 362 I 362
>Z66567-7|CAC42386.3| 414|Caenorhabditis elegans Hypothetical
protein ZK455.8b protein.
Length = 414
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 319 HGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGAS 492
+ LG L+G + G +++R GR+ I +L ++ +SK + + RFL+ A+
Sbjct: 26 YSLGYLVGCFVGGFISDRYGRKTAITGFGILTMLFGFLLTYSKEFEIFLVVRFLLAAT 83
>Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical
protein ZK455.8a protein.
Length = 757
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 319 HGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGAS 492
+ LG L+G + G +++R GR+ I +L ++ +SK + + RFL+ A+
Sbjct: 314 YSLGYLVGCFVGGFISDRYGRKTAITGFGILTMLFGFLLTYSKEFEIFLVVRFLLAAT 371
>AF199013-1|AAG28557.1| 414|Caenorhabditis elegans organic cation
transporter protein.
Length = 414
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 319 HGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGAS 492
+ LG L+G + G +++R GR+ I +L ++ +SK + + RFL+ A+
Sbjct: 26 YSLGYLVGCFVGGFISDRYGRKTAITGFGILTMLFGFLLTYSKEFEIFLVVRFLLAAT 83
>Z83113-3|CAB05545.1| 479|Caenorhabditis elegans Hypothetical
protein K08H10.6 protein.
Length = 479
Score = 31.5 bits (68), Expect = 0.61
Identities = 22/107 (20%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Frame = +1
Query: 325 LGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAI---MIFFSKMPVVMYLARFLMGAST 495
+GA++G+Y L + +G R ++ +++ + A + + ++ ++ ++R L G +
Sbjct: 83 IGAMIGAYISIFLLQSIGPRNSLLLAAILQLFSAPVFGLAYSLRLCELLPISRILSGIAF 142
Query: 496 GVIAGFSVTMIYVTEIADKEIRAH*YDNSVMNNFGCLSYIAPASFDT 636
+ G S +++TEI+ + R NS+ G +++ A+ T
Sbjct: 143 AI--GISAQGVFLTEISPAKFRG--LTNSLSGLIGNCAFLLAATLGT 185
>AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical
protein Y51A2D.5 protein.
Length = 613
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/85 (23%), Positives = 41/85 (48%)
Frame = +1
Query: 307 VVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMG 486
+VS+ A +G++ ++R GR+ I S+ + GA++ + +VM + R +G
Sbjct: 71 IVSITPGMAAVGAWFSGAGSDRYGRKPIIIGSTLIFVCGAVICAVAWTKIVMLIGRIFLG 130
Query: 487 ASTGVIAGFSVTMIYVTEIADKEIR 561
G + V +Y+ E + +R
Sbjct: 131 VGIGFAS--MVVPVYLGEASPTHVR 153
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +1
Query: 298 ISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMI 435
I W+ + + L+G + E++GRRK +F+ S G++ ++++
Sbjct: 318 IIWISVILSICNLIGPFAPMFFIEKLGRRK-LFLFSCAGVVVSLVL 362
>U10438-3|AAA19082.2| 242|Caenorhabditis elegans Drosophila
odd-skipped-like protein1 protein.
Length = 242
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 519 H*KTGNYARRRPHEKTCKVHHNRHFTKKYH 430
H KT N R+RP ++ + RHFTK Y+
Sbjct: 113 HNKTNNAIRKRPKKEFICKYCARHFTKSYN 142
>AF016679-6|AAB66156.1| 490|Caenorhabditis elegans Hypothetical
protein T28C12.1 protein.
Length = 490
Score = 29.5 bits (63), Expect = 2.4
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Frame = +1
Query: 199 INIYVYWSNISVAFASDSKLSSGERGVKITD-EQISWVVSLHGLGALLGSYGGQLLNERV 375
++++ Y S +S +SK + K D + + WVV+ +G + + N++
Sbjct: 40 MSMWPYLSGVSFIDNMESKKFQTFQLDKTADFDFLGWVVASCSIGCTIANPIYGYWNQKT 99
Query: 376 GRRK----TIFVSSAPGILG-AIMIFFSKMPVVMYLARFLMGASTGVIAGFSV 519
K T F+ +A G L A++ FF + M ARFL G G IA V
Sbjct: 100 MSVKWPVITGFLIAAVGQLWYALLGFFGNVKWFMLCARFLTGLGVGNIAALRV 152
>AF098996-4|AAC68705.1| 888|Caenorhabditis elegans Hypothetical
protein T11F1.8 protein.
Length = 888
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 447 NACCDVPCTFSHGGVDGRNCRFF 515
N CDV CTF+H + +FF
Sbjct: 27 NELCDVKCTFNHSELTSETIKFF 49
>Z71262-4|CAA95814.1| 775|Caenorhabditis elegans Hypothetical
protein F22D6.5 protein.
Length = 775
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 234 HANVAPVNINVNEAQIPAKYCTF 166
HA++ P NI VNE+++ K C F
Sbjct: 580 HADIKPDNILVNESKLTLKLCDF 602
>AF098996-2|AAC68711.3| 431|Caenorhabditis elegans Hypothetical
protein T11F1.6 protein.
Length = 431
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 456 CDVPCTFSHGGVDGRNCRFFSDN 524
CD+ CTF+H + + FF N
Sbjct: 31 CDLQCTFNHSEITSKTTEFFPTN 53
>Z92796-4|CAB63231.1| 516|Caenorhabditis elegans Hypothetical
protein H25K10.5 protein.
Length = 516
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 456 CDVPCTFSHGGVDGRNCRFFSDN--DIC 533
CD+ CTF+H + +FF N +IC
Sbjct: 53 CDLKCTFNHSEMTSETIKFFPKNCTNIC 80
>Z79602-1|CAB01888.3| 508|Caenorhabditis elegans Hypothetical
protein K09E9.1 protein.
Length = 508
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 262 SGERGV---KITDEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIM 432
S ERG K +++ + + SL GAL+GS+ L++R+GR+ +G I+
Sbjct: 100 SVERGFACQKNSNQTTAMMSSLLMWGALIGSFVCGFLSDRLGRKPVYLGCLLMITIGHIL 159
Query: 433 IFFSKMPVVMYLARFLMGASTGVIAGF 513
+ FS MYL+ + A+ + F
Sbjct: 160 LTFS-----MYLSWMTINATLAAMGFF 181
>U56964-6|AAB54035.1| 848|Caenorhabditis elegans Hypothetical
protein F52E4.7 protein.
Length = 848
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 379 VQHVRSIIDRRKNLTT-HPAHEATPPMISVRQ*FLRPVRRLITWNRWRRPR*C 224
+ H+ ++ +L+ H HE P S R L P+ LI W + RP+ C
Sbjct: 350 MSHLSALFSNLNDLSLDHEWHELCIPKQSQRFRALSPLSDLINWLKTNRPKAC 402
>AL110479-6|CAB54354.2| 447|Caenorhabditis elegans Hypothetical
protein Y105C5B.8 protein.
Length = 447
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 576 IILMRPNLLIGYFCYIY 526
+IL+ PNL++ FCY+Y
Sbjct: 235 LILIFPNLILNMFCYVY 251
>Z99281-14|CAB16524.1| 532|Caenorhabditis elegans Hypothetical
protein Y57G11C.23 protein.
Length = 532
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 325 LGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTGVI 504
LG L+G+ L++ +GRR S G+ I+ + Y+ RFL+G + I
Sbjct: 115 LGTLVGNLILGYLSDTIGRRPVYIFSILLGVPSVILSAALNDVMSFYIFRFLVGFA---I 171
Query: 505 AG-FSVTMIYVTEI 543
AG +V Y +E+
Sbjct: 172 AGTLTVGWTYASEM 185
>U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform d protein.
Length = 312
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 309 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 425
GVAS GC F R + E+T N C V +NIRC
Sbjct: 86 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 123
>U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform c protein.
Length = 440
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 309 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 425
GVAS GC F R + E+T N C V +NIRC
Sbjct: 86 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 123
>U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform a protein.
Length = 445
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 309 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 425
GVAS GC F R + E+T N C V +NIRC
Sbjct: 86 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 123
>AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 436
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 309 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 425
GVAS GC F R + E+T N C V +NIRC
Sbjct: 77 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 114
>AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 445
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 309 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 425
GVAS GC F R + E+T N C V +NIRC
Sbjct: 86 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 123
>AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 309 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 425
GVAS GC F R + E+T N C V +NIRC
Sbjct: 86 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 123
>AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 309 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 425
GVAS GC F R + E+T N C V +NIRC
Sbjct: 86 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,720,367
Number of Sequences: 27780
Number of extensions: 366592
Number of successful extensions: 871
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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