Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0442
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.9  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   4.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.9  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 84  YANKGVLSPISTIKPS 37
           Y N+ +L+P+ST+ P+
Sbjct: 307 YGNRELLTPVSTMLPA 322


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 253 KLSSGERGVKITDEQISWVVSLHGLGALLGSYG 351
           +LS  +R ++   EQ++    LHGL  L G +G
Sbjct: 113 QLSREQRFLRRRLEQLTNQTGLHGLHGLHGLHG 145


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 84  YANKGVLSPISTIKPS 37
           Y N+ +L+P+ST+ P+
Sbjct: 307 YGNRELLTPVSTMLPA 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,631
Number of Sequences: 438
Number of extensions: 4808
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)