Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0441
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...   168   7e-43
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    35   0.012
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    28   1.1  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    27   3.3  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.7  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   9.9  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   9.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score =  168 bits (408), Expect = 7e-43
 Identities = 91/190 (47%), Positives = 120/190 (63%), Gaps = 5/190 (2%)
 Frame = +2

Query: 5    KYWLDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNW 184
            KYW+D+QLR+GDYDSHDIERY RAKFLDY+TD  S+YPSPTG+LI IDL YN+HSAYGNW
Sbjct: 1683 KYWIDVQLRFGDYDSHDIERYTRAKFLDYSTDAQSMYPSPTGVLIGIDLCYNMHSAYGNW 1742

Query: 185  FPGCKPLIQQAMAKIMKANPALYGSENVYVK----HCNCILQNLLNLTSPVRTMENCSLI 352
             PG KPLIQQ+M KIMKANPALY       K    + +   +  L+ ++      N   +
Sbjct: 1743 IPGMKPLIQQSMNKIMKANPALYVLRERIRKGLQLYASEPQEQYLSSSNYAELFSNQIQL 1802

Query: 353  KSFGSLMTRMCIV*QFTKPLXGT*QLNPSMEPFLYSIPNWTVFLKIIHTSVWQG-RNAWT 529
                + + R+ I   F   L  T  +N ++  F+++     +FLK+IHTSVW G +    
Sbjct: 1803 FVDDTNVYRVTIHKTFEGNLT-TKPINGAI--FIFNPRTGQLFLKVIHTSVWAGQKRLGQ 1859

Query: 530  VAKWRLQRSV 559
            +AKW+    V
Sbjct: 1860 LAKWKTAEEV 1869



 Score =  134 bits (324), Expect = 1e-32
 Identities = 76/110 (69%), Positives = 81/110 (73%), Gaps = 3/110 (2%)
 Frame = +1

Query: 256  LRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFXXNLTTKP 435
            LRERIRK LQLY+SEP E YLSS NY ELFSNQI  FVDDTNVYRVTIHKTF  NLTTKP
Sbjct: 1767 LRERIRKGLQLYASEPQEQYLSSSNYAELFSNQIQLFVDDTNVYRVTIHKTFEGNLTTKP 1826

Query: 436  INGAIFIFNPELDSIP*NHPH*CM-AGQKRLDS-C*METAEK-CALIRSL 576
            INGAIFIFNP    +     H  + AGQKRL      +TAE+  ALIRSL
Sbjct: 1827 INGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALIRSL 1876


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = -3

Query: 118 RIYRHVVCSVIQEFSTSISFDVVRIVITPTKLYIKPVLF 2
           R++ HV CSV+ +F+  + FD+  +++    L++ PVLF
Sbjct: 5   RVFEHVHCSVLYKFNNIVKFDLYNVLL--FLLFLLPVLF 41


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 444 SIDGFSCQVPXKGFVNCYTIHIRVINEPNDLIREQFSIV 328
           +I  FS +VP +G  NC ++ +    EP   + +  +IV
Sbjct: 27  AISAFSVKVPCEGAANCNSVRLVNSKEPEKYVSDANAIV 65


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 379 NVYRVTIHKTFXXNLTTKPINGA 447
           N+YR  IH T    LTTK + GA
Sbjct: 176 NIYRTHIHTTTHGELTTKLLIGA 198


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 263 NVYVKHCNCILQNLLNLTSPVRTMENCSLIKSFGSLMTRMCIV 391
           ++Y++H N +LQN++    P    +  SL+ +  SL  R  ++
Sbjct: 372 SIYLRHFNGVLQNII---EPAAARKRSSLLTAIRSLGDRKIVL 411


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 305  LNLTSPVRTMENCSLIKSFGS 367
            +N T P+  +EN  ++ SFGS
Sbjct: 1459 INSTIPINPLENHGMLNSFGS 1479


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +2

Query: 455 YSIPNWTVFLKIIHTSVWQGRNAWTVAKWRL 547
           Y    WT  +K+    ++  R  W V  W L
Sbjct: 129 YFYETWTKAVKVTAVGLYNSRKKWVVIIWLL 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,144
Number of Sequences: 5004
Number of extensions: 63055
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)