Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0441
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 181 5e-46
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 181 5e-46
02_05_0397 + 28641033-28641231,28641385-28641485,28642012-286420... 30 1.5
06_03_0642 + 23084397-23084909,23084990-23085123,23085618-230857... 28 7.8
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 181 bits (440), Expect = 5e-46
Identities = 95/191 (49%), Positives = 121/191 (63%), Gaps = 6/191 (3%)
Frame = +2
Query: 5 KYWLDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNW 184
KYW+D+QLRWGDYDSHDIERY RAKF+DYTTDNMSIYPSPTG++I IDLAYNLHSA+GNW
Sbjct: 1674 KYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNW 1733
Query: 185 FPGCKPLIQQAMAKIMKANPALYGSENVYVKHCNCILQNLLNLTSPVRTMENCSLIKSFG 364
FPG KPL+QQAM KIMK+NPALY K T P + +N I S
Sbjct: 1734 FPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSS---EPTEPYLSSQNYGEIFS-N 1789
Query: 365 SLMTRMCIV*QFTKPLXGT*QLNPSMEP-----FLYSIPNWTVFLKIIHTSVWQG-RNAW 526
++ + + + T + N + +P F+++ +FLK+IHTSVW G +
Sbjct: 1790 QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLG 1849
Query: 527 TVAKWRLQRSV 559
+AKW+ V
Sbjct: 1850 QLAKWKTAEEV 1860
Score = 152 bits (369), Expect = 2e-37
Identities = 81/110 (73%), Positives = 87/110 (79%), Gaps = 3/110 (2%)
Frame = +1
Query: 256 LRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFXXNLTTKP 435
LRERIRK LQLYSSEPTEPYLSSQNYGE+FSNQIIWFVDDTNVYRVTIHKTF NLTTKP
Sbjct: 1758 LRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKP 1817
Query: 436 INGAIFIFNPELDSIP*NHPH*CM-AGQKRLDS-C*METAEK-CALIRSL 576
INGAIFIFNP + H + AGQKRL +TAE+ AL+RSL
Sbjct: 1818 INGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSL 1867
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 181 bits (440), Expect = 5e-46
Identities = 95/191 (49%), Positives = 121/191 (63%), Gaps = 6/191 (3%)
Frame = +2
Query: 5 KYWLDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNW 184
KYW+D+QLRWGDYDSHDIERY RAKF+DYTTDNMSIYPSPTG++I IDLAYNLHSA+GNW
Sbjct: 1674 KYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNW 1733
Query: 185 FPGCKPLIQQAMAKIMKANPALYGSENVYVKHCNCILQNLLNLTSPVRTMENCSLIKSFG 364
FPG KPL+QQAM KIMK+NPALY K T P + +N I S
Sbjct: 1734 FPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSS---EPTEPYLSSQNYGEIFS-N 1789
Query: 365 SLMTRMCIV*QFTKPLXGT*QLNPSMEP-----FLYSIPNWTVFLKIIHTSVWQG-RNAW 526
++ + + + T + N + +P F+++ +FLK+IHTSVW G +
Sbjct: 1790 QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLG 1849
Query: 527 TVAKWRLQRSV 559
+AKW+ V
Sbjct: 1850 QLAKWKTAEEV 1860
Score = 152 bits (369), Expect = 2e-37
Identities = 81/110 (73%), Positives = 87/110 (79%), Gaps = 3/110 (2%)
Frame = +1
Query: 256 LRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFXXNLTTKP 435
LRERIRK LQLYSSEPTEPYLSSQNYGE+FSNQIIWFVDDTNVYRVTIHKTF NLTTKP
Sbjct: 1758 LRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKP 1817
Query: 436 INGAIFIFNPELDSIP*NHPH*CM-AGQKRLDS-C*METAEK-CALIRSL 576
INGAIFIFNP + H + AGQKRL +TAE+ AL+RSL
Sbjct: 1818 INGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSL 1867
>02_05_0397 +
28641033-28641231,28641385-28641485,28642012-28642068,
28642087-28642295,28642378-28642924
Length = 370
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 301 PTEPYLSSQNYGELFS-NQIIWFVDDTNVYRVTIHKTFXXNLTTKPI 438
P +P L + Y L++ II+++DDT + V H + +KP+
Sbjct: 169 PFDPTLEAHRYSVLWAPTHIIFYIDDTPIREVIRHPGMGGDFPSKPM 215
>06_03_0642 +
23084397-23084909,23084990-23085123,23085618-23085731,
23085929-23086112,23086212-23086280,23087319-23087576
Length = 423
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +2
Query: 449 FLYSIPNWTVFLKIIHTSVWQGRNAWTVAKWRLQR 553
F +P+W++ L I T WT+ W+ +R
Sbjct: 90 FYNQLPDWSMLLAAITTIFLAAEKQWTLLDWKPKR 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,235,663
Number of Sequences: 37544
Number of extensions: 377047
Number of successful extensions: 824
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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