Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0441
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                      131   4e-31
SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  

>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score =  131 bits (317), Expect = 4e-31
 Identities = 80/187 (42%), Positives = 102/187 (54%), Gaps = 1/187 (0%)
 Frame = +2

Query: 2    EKYWLDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGN 181
            +KYW+D+QLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLL+AIDLAYNLH     
Sbjct: 1576 QKYWVDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLVAIDLAYNLHRI--- 1632

Query: 182  WFPGCKPLIQQAMAKIMKANPALYGSENVYVKHCNCILQNLLNLTSPVRTMENCSLIKSF 361
               G   L               Y ++ + +    C+  ++     PV  + N     +F
Sbjct: 1633 -LMGTGTLFVSQKWSWFGGQRLKY-TKQILLPSAFCVAGDIAIQAKPVMRLMN-----TF 1685

Query: 362  GSLMTRMCIV*QFTKPLXGT*QLNPSMEPFLYSIPNWTVFLKIIHTSVWQG-RNAWTVAK 538
               +T        TKP+ G          F+++     +FLKIIHTSVW G +    +AK
Sbjct: 1686 EGNLT--------TKPINGA--------IFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAK 1729

Query: 539  WRLQRSV 559
            W+    V
Sbjct: 1730 WKTAEEV 1736



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 34/60 (56%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
 Frame = +1

Query: 406  TFXXNLTTKPINGAIFIFNPELDSIP*NHPH*CM-AGQKRLDS-C*METAEK-CALIRSL 576
            TF  NLTTKPINGAIFIFNP    +     H  + AGQKRL      +TAE+  ALIRSL
Sbjct: 1684 TFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSL 1743


>SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +2

Query: 41  YDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQ 211
           Y+   ++ +   +++ Y T   +   +P+ +   I     + +AYG   P C PLI+
Sbjct: 355 YNGDPLQDFTLMRYILYNTLRSTCTLNPSFVAAPITYTITMATAYGLSLPACLPLIK 411


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,111,936
Number of Sequences: 59808
Number of extensions: 476814
Number of successful extensions: 926
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)