Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0441
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli... 187 5e-48
AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical... 31 0.56
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical... 31 0.56
Z81143-2|CAB03515.1| 340|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein. 29 4.0
AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein. 29 4.0
Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical p... 28 5.3
Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical p... 28 5.3
>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
factor) relatedprotein 8 protein.
Length = 2329
Score = 187 bits (456), Expect = 5e-48
Identities = 100/192 (52%), Positives = 125/192 (65%), Gaps = 6/192 (3%)
Frame = +2
Query: 2 EKYWLDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGN 181
+KYWLD+QLRWGDYDSHD+ERYARAKFLDYTTDNMSIYPSPTG+LIAIDLAYNL+SAYGN
Sbjct: 1651 QKYWLDVQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLYSAYGN 1710
Query: 182 WFPGCKPLIQQAMAKIMKANPALYGSENVYVKHCNCILQNLLNLTSPVRTMENCSLIKSF 361
WFPG KPLI+QAMAKI+KANPA Y K T P T +N + S
Sbjct: 1711 WFPGMKPLIRQAMAKIIKANPAFYVLRERIRKGLQLYSS---EPTEPYLTSQNYGELFS- 1766
Query: 362 GSLMTRMCIV*QFTKPLXGT*QLNPSMEP-----FLYSIPNWTVFLKIIHTSVWQGRNAW 526
++ + + + T + N + +P F+++ +FLKIIHTSVW G+
Sbjct: 1767 NQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRL 1826
Query: 527 T-VAKWRLQRSV 559
+ +AKW+ V
Sbjct: 1827 SQLAKWKTAEEV 1838
Score = 153 bits (370), Expect = 1e-37
Identities = 82/110 (74%), Positives = 87/110 (79%), Gaps = 3/110 (2%)
Frame = +1
Query: 256 LRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFXXNLTTKP 435
LRERIRK LQLYSSEPTEPYL+SQNYGELFSNQIIWFVDDTNVYRVTIHKTF NLTTKP
Sbjct: 1736 LRERIRKGLQLYSSEPTEPYLTSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKP 1795
Query: 436 INGAIFIFNPELDSIP*NHPH*CM-AGQKRLDS-C*METAEK-CALIRSL 576
INGAIFIFNP + H + AGQKRL +TAE+ ALIRSL
Sbjct: 1796 INGAIFIFNPRTGQLFLKIIHTSVWAGQKRLSQLAKWKTAEEVAALIRSL 1845
>AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical
protein Y110A7A.9b protein.
Length = 908
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 373 DTNVYRVTIHKTFXXNLTTKPINGAIFIFNPEL 471
+TN+Y +T HK + N IN +++ NPEL
Sbjct: 97 NTNIYLITYHKAY-RNTVFIAINSGLYLVNPEL 128
>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
protein Y110A7A.9a protein.
Length = 1019
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 373 DTNVYRVTIHKTFXXNLTTKPINGAIFIFNPEL 471
+TN+Y +T HK + N IN +++ NPEL
Sbjct: 208 NTNIYLITYHKAY-RNTVFIAINSGLYLVNPEL 239
>Z81143-2|CAB03515.1| 340|Caenorhabditis elegans Hypothetical
protein ZK265.3 protein.
Length = 340
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 59 ERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFP 190
E+Y ++ T ++ P PTGL + DL Y+L YG+ FP
Sbjct: 148 EKYEGGATANFMTIFRNLRPPPTGLKVYDDLWYDLR--YGDNFP 189
>Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical
protein F54B11.3b protein.
Length = 879
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = +2
Query: 77 KFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYG 256
+F+D+ + Y S L + + Y + GC ++ + I A+ A+Y
Sbjct: 629 RFIDFCAGKLFYYGSDGFLSANKSIGTFFNGCYETLYNGCTAIVGHTKSFIYNASNAVY- 687
Query: 257 SENVYVKHCNCILQNLLNLTSPVRTMENCSLIKSFGSLMTRM 382
N + + I LLN ++ + SL+KSFG+ +T +
Sbjct: 688 --NFF----STIFAGLLNFSTSSQN-SILSLLKSFGTGITNI 722
>Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical
protein F54B11.3a protein.
Length = 1111
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = +2
Query: 77 KFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYG 256
+F+D+ + Y S L + + Y + GC ++ + I A+ A+Y
Sbjct: 629 RFIDFCAGKLFYYGSDGFLSANKSIGTFFNGCYETLYNGCTAIVGHTKSFIYNASNAVY- 687
Query: 257 SENVYVKHCNCILQNLLNLTSPVRTMENCSLIKSFGSLMTRM 382
N + + I LLN ++ + SL+KSFG+ +T +
Sbjct: 688 --NFF----STIFAGLLNFSTSSQN-SILSLLKSFGTGITNI 722
>AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein.
Length = 879
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = +2
Query: 77 KFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYG 256
+F+D+ + Y S L + + Y + GC ++ + I A+ A+Y
Sbjct: 629 RFIDFCAGKLFYYGSDGFLSANKSIGTFFNGCYETLYNGCTAIVGHTKSFIYNASNAVY- 687
Query: 257 SENVYVKHCNCILQNLLNLTSPVRTMENCSLIKSFGSLMTRM 382
N + + I LLN ++ + SL+KSFG+ +T +
Sbjct: 688 --NFF----STIFAGLLNFSTSSQN-SILSLLKSFGTGITNI 722
>AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.
Length = 1111
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = +2
Query: 77 KFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYG 256
+F+D+ + Y S L + + Y + GC ++ + I A+ A+Y
Sbjct: 629 RFIDFCAGKLFYYGSDGFLSANKSIGTFFNGCYETLYNGCTAIVGHTKSFIYNASNAVY- 687
Query: 257 SENVYVKHCNCILQNLLNLTSPVRTMENCSLIKSFGSLMTRM 382
N + + I LLN ++ + SL+KSFG+ +T +
Sbjct: 688 --NFF----STIFAGLLNFSTSSQN-SILSLLKSFGTGITNI 722
>Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical
protein R06F6.8a protein.
Length = 1468
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 317 SPVRTMENCSLIKSFGSLMTRMCIV*QFTKPLXGT 421
SP T ENC LI+ F +TR+ + PL G+
Sbjct: 1112 SPKTTNENCFLIEDFALALTRLHAQFSWPYPLIGS 1146
>Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical
protein R06F6.8b protein.
Length = 1470
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 317 SPVRTMENCSLIKSFGSLMTRMCIV*QFTKPLXGT 421
SP T ENC LI+ F +TR+ + PL G+
Sbjct: 1114 SPKTTNENCFLIEDFALALTRLHAQFSWPYPLIGS 1148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,164,624
Number of Sequences: 27780
Number of extensions: 349032
Number of successful extensions: 808
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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