Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0441
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80070.1 68414.m09373 splicing factor, putative strong simila...   177   4e-45
At4g38780.1 68417.m05491 splicing factor, putative strong simila...   177   7e-45
At1g08510.1 68414.m00942 acyl-[acyl carrier protein] thioesteras...    31   0.92 
At4g15233.1 68417.m02334 ABC transporter family protein similar ...    30   1.6  
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp...    28   6.5  
At4g31440.1 68417.m04468 hypothetical protein                          27   8.6  
At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel...    27   8.6  

>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2382

 Score =  177 bits (432), Expect = 4e-45
 Identities = 93/191 (48%), Positives = 120/191 (62%), Gaps = 6/191 (3%)
 Frame = +2

Query: 5    KYWLDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNW 184
            KYW+D+QLRWGDYDSHDIERY RAKF+DYTTDNMSIYPSPTG++I +DLAYNLHSA+GNW
Sbjct: 1706 KYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNW 1765

Query: 185  FPGCKPLIQQAMAKIMKANPALYGSENVYVKHCNCILQNLLNLTSPVRTMENCSLIKSFG 364
            FPG KPL+ QAM KIMK+NPALY       K            T P  + +N   I S  
Sbjct: 1766 FPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSS---EPTEPYLSSQNYGEIFS-N 1821

Query: 365  SLMTRMCIV*QFTKPLXGT*QLNPSMEP-----FLYSIPNWTVFLKIIHTSVWQG-RNAW 526
             ++  +     +   +  T + N + +P     F+++     +FLK+IHTSVW G +   
Sbjct: 1822 QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLG 1881

Query: 527  TVAKWRLQRSV 559
             +AKW+    V
Sbjct: 1882 QLAKWKTAEEV 1892



 Score =  152 bits (369), Expect = 2e-37
 Identities = 81/110 (73%), Positives = 87/110 (79%), Gaps = 3/110 (2%)
 Frame = +1

Query: 256  LRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFXXNLTTKP 435
            LRERIRK LQLYSSEPTEPYLSSQNYGE+FSNQIIWFVDDTNVYRVTIHKTF  NLTTKP
Sbjct: 1790 LRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKP 1849

Query: 436  INGAIFIFNPELDSIP*NHPH*CM-AGQKRLDS-C*METAEK-CALIRSL 576
            INGAIFIFNP    +     H  + AGQKRL      +TAE+  AL+RSL
Sbjct: 1850 INGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSL 1899


>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2332

 Score =  177 bits (430), Expect = 7e-45
 Identities = 93/191 (48%), Positives = 120/191 (62%), Gaps = 6/191 (3%)
 Frame = +2

Query: 5    KYWLDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNW 184
            KYW+D+QLRWGDYDSHDIERY +AKF+DYTTDNMSIYPSPTG++I +DLAYNLHSA+GNW
Sbjct: 1658 KYWIDVQLRWGDYDSHDIERYTKAKFMDYTTDNMSIYPSPTGVIIGLDLAYNLHSAFGNW 1717

Query: 185  FPGCKPLIQQAMAKIMKANPALYGSENVYVKHCNCILQNLLNLTSPVRTMENCSLIKSFG 364
            FPG KPL+ QAM KIMK+NPALY       K            T P  + +N   I S  
Sbjct: 1718 FPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSS---EPTEPYLSSQNYGEIFS-N 1773

Query: 365  SLMTRMCIV*QFTKPLXGT*QLNPSMEP-----FLYSIPNWTVFLKIIHTSVWQG-RNAW 526
             ++  +     +   +  T + N + +P     F+++     +FLKIIHTSVW G +   
Sbjct: 1774 QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGVIFIFNPRTGQLFLKIIHTSVWAGQKRLG 1833

Query: 527  TVAKWRLQRSV 559
             +AKW+    V
Sbjct: 1834 QLAKWKTAEEV 1844



 Score =  151 bits (365), Expect = 5e-37
 Identities = 80/110 (72%), Positives = 86/110 (78%), Gaps = 3/110 (2%)
 Frame = +1

Query: 256  LRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFXXNLTTKP 435
            LRERIRK LQLYSSEPTEPYLSSQNYGE+FSNQIIWFVDDTNVYRVTIHKTF  NLTTKP
Sbjct: 1742 LRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKP 1801

Query: 436  INGAIFIFNPELDSIP*NHPH*CM-AGQKRLDS-C*METAEK-CALIRSL 576
            ING IFIFNP    +     H  + AGQKRL      +TAE+  AL+RSL
Sbjct: 1802 INGVIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALVRSL 1851


>At1g08510.1 68414.m00942 acyl-[acyl carrier protein] thioesterase /
           acyl-ACP thioesterase / oleoyl-[acyl-carrier protein]
           hydrolase / S-acyl fatty acid synthase thioesterase
           identical to acyl-(acyl carrier protein) thioesterase
           [Arabidopsis thaliana] GI:804948
          Length = 412

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 431 NPSMEPFLYSIPNWTVFLKIIHTSVWQGRNAWTVAKWRLQRS 556
           +P+   F+  +P+W++ L  I T        W +  W+ +RS
Sbjct: 79  HPAPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRS 120


>At4g15233.1 68417.m02334 ABC transporter family protein similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, PDR5-like ABC transporter
            [Spirodela polyrhiza] GI:1514643; contains Pfam profile
            PF00005: ABC transporter
          Length = 1168

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 408  GFVNCYTIHIRVINEPNDLIREQFSIVLTGEVRFS 304
            G  NC T+   V  E N   RE+FS+V+T  V  +
Sbjct: 1024 GINNCSTVLFSVATERNVFYRERFSLVVTPNVHIA 1058


>At4g29140.1 68417.m04170 MATE efflux protein-related several
           hypothetical proteins - Arabidopsis thaliana; contains
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 532

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 71  RAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQAMAKI 229
           R K    T     ++ + TG+ IA   AY++ +A+G  F G K ++Q   A +
Sbjct: 352 RPKTAKLTATVAIVFAAVTGI-IAAAFAYSVRNAWGRIFTGDKEILQLTAAAL 403


>At4g31440.1 68417.m04468 hypothetical protein
          Length = 379

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 390 TIHIRVINEPNDLIREQFSIVL 325
           + HI+  N+P+D+ REQ S+ L
Sbjct: 322 SFHIQTSNQPSDITREQHSVSL 343


>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
           putative (CNGC17) similar to cyclic nucleotide and
           calmodulin-regulated ion channel cngc5 GI:4581205 from
           [Arabidopsis thaliana]
          Length = 720

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 447 HFYIQSRTGQYSLKSSTLVYGRAE 518
           H +I+ RTG  +  SST V+GR E
Sbjct: 139 HIFIKFRTGFIAPNSSTRVFGRGE 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,068,648
Number of Sequences: 28952
Number of extensions: 315781
Number of successful extensions: 657
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)