Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0440
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    27   3.8  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   6.6  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   6.6  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   8.8  

>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 172 AKEYNIEKSCDKYMNVDVVKQFMEMYKMACS 264
           AK   I +SC KYMN D V   ++ +KM CS
Sbjct: 128 AKNLYICESCLKYMNSDHV---LQRHKMKCS 155


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 58   VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 192
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +1

Query: 412 STLLLPRAST---EPTARVSTCPLLTRSIPTS-SLTACHQ*SLYDEDD*SRQGPVSGNTT 579
           ST + P+ +T   +    + T P+   ++P S +  A    ++ D DD S     SGNTT
Sbjct: 184 STNVTPKKTTTQIDVQTNIVTPPITVTAVPDSPNPPAATPATVADNDDLSIVSSDSGNTT 243

Query: 580 ASR 588
           A R
Sbjct: 244 APR 246


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +1

Query: 79  VNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYN 186
           VNL  K  ++   ++++H+L+    ++I+   K+Y+
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,275
Number of Sequences: 5004
Number of extensions: 50413
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)