Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0440
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         30   2.3  
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)        29   4.1  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   7.1  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         28   9.4  

>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 258 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 428
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 429 A 431
           +
Sbjct: 280 S 280


>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
          Length = 979

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -3

Query: 359 NIEVLSVVEDSEDFDGFFHLELVGVDEGLSTREHAILYISMNCLTTSTFMYLSQ---LFS 189
           N  V +   DSE F        + V  GL T ++ +LY++++ L  +T+    Q   L +
Sbjct: 244 NWRVFATEIDSEIFKKPLETLKLAVPSGLYTIQNNLLYVALSNLDAATYQVTYQLKILTT 303

Query: 188 MLYSLAISLMSSNMVGW 138
            L+S+A+     + + W
Sbjct: 304 ALFSVAMLSKKLSSIKW 320


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 369 TACWMRERINGGMFVYAFTAACFHR 443
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 415 TLLLPRASTEPTARVSTCPLLTRSIPTSSLT 507
           +LLLP      +A   T PLL++SIP+ S T
Sbjct: 208 SLLLPDMPITSSAMAPTFPLLSQSIPSMSTT 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,738,889
Number of Sequences: 59808
Number of extensions: 422095
Number of successful extensions: 1073
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)