BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0438 (747 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 155 6e-39 SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 155 8e-39 SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 155 8e-39 SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 94 2e-20 SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 87 3e-18 SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 72 1e-13 SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.008 SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.008 SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 34 0.019 SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.025 SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 31 0.13 SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 29 0.70 SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 27 2.8 SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 3.8 SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 27 3.8 SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 3.8 SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.0 SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 26 5.0 SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 26 6.6 SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.6 SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 8.7 SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 8.7 >SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual Length = 460 Score = 155 bits (376), Expect = 6e-39 Identities = 72/83 (86%), Positives = 77/83 (92%) Frame = +1 Query: 256 ALWKFETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435 ALWKFET KY VT+I APGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTRE Sbjct: 76 ALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTRE 135 Query: 436 HALLAFTLGVKQLIVGVNKMDST 504 HALLA+TLGVKQLIV VNKMD+T Sbjct: 136 HALLAYTLGVKQLIVAVNKMDTT 158 Score = 151 bits (365), Expect = 1e-37 Identities = 69/75 (92%), Positives = 72/75 (96%) Frame = +2 Query: 32 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211 MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60 Query: 212 DKLKAERELGITIDM 256 DKLKAERE GITID+ Sbjct: 61 DKLKAERERGITIDI 75 >SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual Length = 460 Score = 155 bits (375), Expect = 8e-39 Identities = 71/83 (85%), Positives = 77/83 (92%) Frame = +1 Query: 256 ALWKFETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435 ALWKFET KY VT+I APGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTRE Sbjct: 76 ALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTRE 135 Query: 436 HALLAFTLGVKQLIVGVNKMDST 504 HALLA+TLGVKQLIV VNKMD+T Sbjct: 136 HALLAYTLGVKQLIVAVNKMDTT 158 Score = 151 bits (365), Expect = 1e-37 Identities = 69/75 (92%), Positives = 72/75 (96%) Frame = +2 Query: 32 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211 MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60 Query: 212 DKLKAERELGITIDM 256 DKLKAERE GITID+ Sbjct: 61 DKLKAERERGITIDI 75 >SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual Length = 460 Score = 155 bits (375), Expect = 8e-39 Identities = 71/83 (85%), Positives = 77/83 (92%) Frame = +1 Query: 256 ALWKFETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435 ALWKFET KY VT+I APGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTRE Sbjct: 76 ALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTRE 135 Query: 436 HALLAFTLGVKQLIVGVNKMDST 504 HALLA+TLGVKQLIV VNKMD+T Sbjct: 136 HALLAYTLGVKQLIVAVNKMDTT 158 Score = 151 bits (365), Expect = 1e-37 Identities = 69/75 (92%), Positives = 72/75 (96%) Frame = +2 Query: 32 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211 MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60 Query: 212 DKLKAERELGITIDM 256 DKLKAERE GITID+ Sbjct: 61 DKLKAERERGITIDI 75 >SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 662 Score = 93.9 bits (223), Expect = 2e-20 Identities = 41/77 (53%), Positives = 55/77 (71%) Frame = +1 Query: 268 FETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447 FET +++ APGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+L Sbjct: 311 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 370 Query: 448 AFTLGVKQLIVGVNKMD 498 A T G+ L+V +NKMD Sbjct: 371 ARTQGINHLVVVINKMD 387 Score = 85.4 bits (202), Expect = 8e-18 Identities = 37/71 (52%), Positives = 52/71 (73%) Frame = +2 Query: 44 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 223 K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295 Query: 224 AERELGITIDM 256 ERE G T+++ Sbjct: 296 EEREKGKTVEV 306 >SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 592 Score = 87.0 bits (206), Expect = 3e-18 Identities = 41/77 (53%), Positives = 50/77 (64%) Frame = +1 Query: 268 FETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447 FE+ K I APGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L Sbjct: 250 FESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYL 309 Query: 448 AFTLGVKQLIVGVNKMD 498 LG+ +++V VNK+D Sbjct: 310 LRALGISEIVVSVNKLD 326 Score = 81.4 bits (192), Expect = 1e-16 Identities = 35/73 (47%), Positives = 51/73 (69%) Frame = +2 Query: 44 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 223 K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234 Query: 224 AERELGITIDMLS 262 ER G+T+D+ S Sbjct: 235 EERARGVTMDVAS 247 >SPBC9B6.04c |tuf1||mitochondrial translation elongation factor EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 439 Score = 71.7 bits (168), Expect = 1e-13 Identities = 35/81 (43%), Positives = 52/81 (64%) Frame = +1 Query: 265 KFETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 444 ++ET+ + + PGH D+IKNMITG + D A+++V+A G+ QTREH L Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162 Query: 445 LAFTLGVKQLIVGVNKMDSTE 507 LA +GVKQ++V +NK+D E Sbjct: 163 LARQVGVKQIVVYINKVDMVE 183 Score = 37.1 bits (82), Expect = 0.003 Identities = 26/71 (36%), Positives = 35/71 (49%) Frame = +2 Query: 38 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 217 ++K H+NI IGHVD GK+T T I KC ++G+ SF +DK Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93 Query: 218 LKAERELGITI 250 E+ GITI Sbjct: 94 APEEKARGITI 104 >SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 842 Score = 35.5 bits (78), Expect = 0.008 Identities = 17/32 (53%), Positives = 19/32 (59%) Frame = +2 Query: 32 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 127 MGK N+ VI HVD GKST T L+ K G Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44 >SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elongation factor 2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 842 Score = 35.5 bits (78), Expect = 0.008 Identities = 17/32 (53%), Positives = 19/32 (59%) Frame = +2 Query: 32 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 127 MGK N+ VI HVD GKST T L+ K G Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44 >SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 34.3 bits (75), Expect = 0.019 Identities = 19/71 (26%), Positives = 33/71 (46%) Frame = +1 Query: 286 YVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 465 +V+ + PGH + M+ G + D A+L++A QT EH + + Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162 Query: 466 KQLIVGVNKMD 498 K +I+ NK+D Sbjct: 163 KHIIILQNKVD 173 >SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schizosaccharomyces pombe|chr 2|||Manual Length = 770 Score = 33.9 bits (74), Expect = 0.025 Identities = 23/65 (35%), Positives = 34/65 (52%) Frame = +2 Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235 NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110 Query: 236 LGITI 250 GITI Sbjct: 111 KGITI 115 Score = 31.5 bits (68), Expect = 0.13 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +1 Query: 268 FETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 438 FE S Y + II PGH DF + D AVL++ A +G I+ + Q R + Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196 >SPBC660.10 |||translation elongation factor G|Schizosaccharomyces pombe|chr 2|||Manual Length = 813 Score = 31.5 bits (68), Expect = 0.13 Identities = 22/66 (33%), Positives = 33/66 (50%) Frame = +2 Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235 N+ +I H+D+GK+T T ++Y G F + G V+D L AER+ Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76 Query: 236 LGITID 253 GITI+ Sbjct: 77 RGITIN 82 Score = 26.2 bits (55), Expect = 5.0 Identities = 22/70 (31%), Positives = 33/70 (47%) Frame = +1 Query: 289 VTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 468 + +I PGH DF + + D AV I+ + AG+ QT+ A G+ Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147 Query: 469 QLIVGVNKMD 498 ++I VNKMD Sbjct: 148 KVIF-VNKMD 156 >SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces pombe|chr 3|||Manual Length = 384 Score = 29.1 bits (62), Expect = 0.70 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = -1 Query: 306 SXNDGNIVLASFELPESISIVIPSSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 127 S + + L S+ P S+S + + A ++YL+ PL S S S + +R SIP Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364 >SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosaccharomyces pombe|chr 1|||Manual Length = 468 Score = 27.1 bits (57), Expect = 2.8 Identities = 22/66 (33%), Positives = 30/66 (45%) Frame = -1 Query: 372 EHSAISLRGSCDHVLDEISVSRSXNDGNIVLASFELPESISIVIPSSRSAFSLSNTQAYL 193 EH+A+ L S +L IS R N GNI L S + + S + L+ + A Sbjct: 5 EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61 Query: 192 KDPLPI 175 K LPI Sbjct: 62 KALLPI 67 >SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1079 Score = 26.6 bits (56), Expect = 3.8 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +1 Query: 295 IIXAPGHRDFIKNMITGTSQADCAVLIV 378 II PGH F GTS + A+L++ Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580 >SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pombe|chr 2|||Manual Length = 662 Score = 26.6 bits (56), Expect = 3.8 Identities = 19/61 (31%), Positives = 25/61 (40%) Frame = -2 Query: 272 SNFQRAYRL*YXAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWW 93 SN +R R + V +PK I I++ F P S S C+Y S D W Sbjct: 13 SNLRRMNRDHSSNNTNRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWR 72 Query: 92 T 90 T Sbjct: 73 T 73 >SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharomyces pombe|chr 3|||Manual Length = 642 Score = 26.6 bits (56), Expect = 3.8 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -1 Query: 258 SISIVIPSSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 142 +IS+ +P+ FSL+ ++ K LPI W S + S V Sbjct: 408 NISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 26.2 bits (55), Expect = 5.0 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = -1 Query: 279 ASFELPESISIVIPSSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSI 130 A+ +LP S S P+S S + L DP +S A + + V +SI Sbjct: 110 ATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSI 159 >SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 646 Score = 26.2 bits (55), Expect = 5.0 Identities = 21/65 (32%), Positives = 30/65 (46%) Frame = +2 Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235 N VI H+D GKST + ++ G I++ + F LDKL+ ER Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103 Query: 236 LGITI 250 GIT+ Sbjct: 104 RGITV 108 >SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 260 Score = 25.8 bits (54), Expect = 6.6 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 Query: 212 DKLKAERELGITIDMLSGSSKLASTMLPS 298 D +KA RELG+ ++ G L ++ +PS Sbjct: 66 DMIKAARELGLNAYVIPGEKLLDASEIPS 94 >SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 96 Score = 25.8 bits (54), Expect = 6.6 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 342 CDHVLDEISVSRSXNDGNIVLASFELPESI 253 CDH+L IS SR G + FEL +I Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFELAVTI 52 >SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 940 Score = 25.4 bits (53), Expect = 8.7 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -1 Query: 336 HVLDEISVSRSXNDGNIVLASFELPESISIVIPSSRSAFS 217 + +D+ SV R N + + ELPE ++ + R AFS Sbjct: 607 YTIDDDSVERIMNCIRAIYSFEELPEFQTVFLDDMRKAFS 646 >SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 255 Score = 25.4 bits (53), Expect = 8.7 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -1 Query: 561 LSMRILPSDSSIWAHCMVFSGIHFVNSYDELFDT 460 + +R++ S S +WAH + SGI N D+ DT Sbjct: 42 IKLRLVGSHS-LWAHYLWNSGIELANYIDKNPDT 74 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,761,949 Number of Sequences: 5004 Number of extensions: 53113 Number of successful extensions: 180 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 179 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 355273338 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -