Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0438
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             106   2e-23
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           98   8e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 70   2e-12
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.19 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.43 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)                   28   9.2  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  106 bits (255), Expect = 2e-23
 Identities = 53/100 (53%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
 Frame = +1

Query: 259 LWKFETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 438
           L +F+T    +T++ APGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQTREH
Sbjct: 5   LTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREH 64

Query: 439 ALLAFTLGVKQLIVGVNKMDST--EHHTVSPD*GIRRKYP 552
           A+L  +LGV QLIV +NK+D     +H   P   I R+ P
Sbjct: 65  AILVRSLGVTQLIVAINKLDMVVLGYHRGKPRSMIGRQEP 104


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 97.9 bits (233), Expect = 8e-21
 Identities = 42/77 (54%), Positives = 57/77 (74%)
 Frame = +1

Query: 268 FETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447
           F+T   + T++ APGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276

Query: 448 AFTLGVKQLIVGVNKMD 498
           A T GVK L++ VNKMD
Sbjct: 277 AKTAGVKHLVILVNKMD 293



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 19/47 (40%), Positives = 33/47 (70%)
 Frame = +2

Query: 116 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDM 256
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+ G T+++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEV 212


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +2

Query: 32  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 178
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = +1

Query: 256 ALWKFETSKYYVTIIXAPGHRDFIKNMITGTSQ 354
           ALWKFET KYYVT+I APGHRDFIKNMITGTSQ
Sbjct: 28  ALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/27 (92%), Positives = 26/27 (96%)
 Frame = +2

Query: 176 MGKGSFKYAWVLDKLKAERELGITIDM 256
           MGKGSFKYAWVLDKLKAERE GITID+
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDI 27


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 24/65 (36%), Positives = 30/65 (46%)
 Frame = +2

Query: 56   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 236  LGITI 250
             GIT+
Sbjct: 1987 RGITV 1991


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 32  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 127
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = +1

Query: 289 VTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 468
           +T I  PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 469 QLIVGVNKMD 498
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/78 (20%), Positives = 36/78 (46%)
 Frame = +1

Query: 340  TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEHHTV 519
            TGT+  D  + +     G+F++ ++ N  +    LLA  +G+ +   G+    +   HT 
Sbjct: 790  TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848

Query: 520  SPD*GIRRKYPHTQKIGT 573
            +    +    PH +++ +
Sbjct: 849  ASTGIMSTAEPHVEELNS 866


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 47  THINIVVIGHVDSGKSTTTGHLIY 118
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)
          Length = 1114

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -1

Query: 291 NIVLASFELPESISIVIPSSRSAFSLSNTQAYLKDPLP--ISWASFSNFSMVRLSIPP 124
           NI      +P +++I   SSR+ F   +TQ   K+PL   + + ++     ++L + P
Sbjct: 326 NITSLKTPMPVNVAITATSSRALFVEWDTQKNRKEPLGFLVMYKTYDTDDFIKLDVGP 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,161,287
Number of Sequences: 59808
Number of extensions: 418104
Number of successful extensions: 975
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)