Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0438
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 162 3e-40
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 162 3e-40
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 155 2e-38
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 155 2e-38
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 109 3e-24
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 109 3e-24
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 100 9e-22
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 67 1e-11
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 67 1e-11
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 64 1e-10
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 64 1e-10
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 64 1e-10
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 37 0.013
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 36 0.030
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.16
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.28
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.28
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.87
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.87
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 31 0.87
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.6
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.6
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.6
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 28 6.1
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 162 bits (393), Expect = 3e-40
Identities = 76/84 (90%), Positives = 79/84 (94%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435
ALWKFET+KYY+TII APGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTRE
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTRE 135
Query: 436 HALLAFTLGVKQLIVGVNKMDSTE 507
HALLA TLGVKQLIV NKMDSTE
Sbjct: 136 HALLAQTLGVKQLIVACNKMDSTE 159
Score = 155 bits (377), Expect = 2e-38
Identities = 72/75 (96%), Positives = 73/75 (97%)
Frame = +2
Query: 32 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 212 DKLKAERELGITIDM 256
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 162 bits (393), Expect = 3e-40
Identities = 76/84 (90%), Positives = 79/84 (94%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435
ALWKFET+KYY+TII APGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTRE
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTRE 135
Query: 436 HALLAFTLGVKQLIVGVNKMDSTE 507
HALLA TLGVKQLIV NKMDSTE
Sbjct: 136 HALLAQTLGVKQLIVACNKMDSTE 159
Score = 155 bits (377), Expect = 2e-38
Identities = 72/75 (96%), Positives = 73/75 (97%)
Frame = +2
Query: 32 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 212 DKLKAERELGITIDM 256
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 155 bits (377), Expect = 2e-38
Identities = 72/75 (96%), Positives = 73/75 (97%)
Frame = +2
Query: 32 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 212 DKLKAERELGITIDM 256
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
Score = 146 bits (353), Expect = 2e-35
Identities = 67/74 (90%), Positives = 71/74 (95%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 435
ALWKFET+KYY+TII APGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTRE
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTRE 135
Query: 436 HALLAFTLGVKQLI 477
HALLA TLGVKQL+
Sbjct: 136 HALLAQTLGVKQLV 149
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 155 bits (377), Expect = 2e-38
Identities = 72/75 (96%), Positives = 73/75 (97%)
Frame = +2
Query: 32 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 212 DKLKAERELGITIDM 256
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
Score = 87.8 bits (208), Expect(2) = 2e-18
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = +1
Query: 256 ALWKFETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVA 381
ALWKFET+KYY+TII APGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 22.6 bits (46), Expect(2) = 2e-18
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 472 LIVGVNKMDSTE 507
L+V NKMDSTE
Sbjct: 114 LVVACNKMDSTE 125
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +2
Query: 32 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 211
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 212 DKLKAER 232
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 109 bits (261), Expect = 3e-24
Identities = 50/80 (62%), Positives = 61/80 (76%)
Frame = +1
Query: 268 FETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447
FETS + ++ APGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 243 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 302
Query: 448 AFTLGVKQLIVGVNKMDSTE 507
+LGV QLIV VNK+D+ +
Sbjct: 303 LRSLGVTQLIVAVNKLDTVD 322
Score = 91.1 bits (216), Expect = 8e-19
Identities = 39/72 (54%), Positives = 54/72 (75%)
Frame = +2
Query: 41 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 220
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 221 KAERELGITIDM 256
+ ERE G+T+D+
Sbjct: 227 EEERERGVTMDI 238
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 109 bits (261), Expect = 3e-24
Identities = 50/80 (62%), Positives = 61/80 (76%)
Frame = +1
Query: 268 FETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447
FETS + ++ APGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 261 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 320
Query: 448 AFTLGVKQLIVGVNKMDSTE 507
+LGV QLIV VNK+D+ +
Sbjct: 321 LRSLGVTQLIVAVNKLDTVD 340
Score = 91.1 bits (216), Expect = 8e-19
Identities = 39/72 (54%), Positives = 54/72 (75%)
Frame = +2
Query: 41 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 220
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 221 KAERELGITIDM 256
+ ERE G+T+D+
Sbjct: 245 EEERERGVTMDI 256
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 100 bits (240), Expect = 9e-22
Identities = 44/77 (57%), Positives = 57/77 (74%)
Frame = +1
Query: 268 FETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447
FET K + TI+ APGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L
Sbjct: 182 FETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSML 241
Query: 448 AFTLGVKQLIVGVNKMD 498
T GVK L++ VNKMD
Sbjct: 242 VKTAGVKHLVILVNKMD 258
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/74 (48%), Positives = 53/74 (71%)
Frame = +2
Query: 35 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 214
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 215 KLKAERELGITIDM 256
ERE G T+++
Sbjct: 164 TNDEEREKGKTVEV 177
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 67.3 bits (157), Expect = 1e-11
Identities = 35/67 (52%), Positives = 43/67 (64%)
Frame = +1
Query: 307 PGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGV 486
PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + + +
Sbjct: 116 PGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFI 168
Query: 487 NKMDSTE 507
NK D E
Sbjct: 169 NKADLVE 175
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 44 KTHINIVVIGHVDSGKSTTT 103
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 67.3 bits (157), Expect = 1e-11
Identities = 35/67 (52%), Positives = 43/67 (64%)
Frame = +1
Query: 307 PGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGV 486
PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + + +
Sbjct: 116 PGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFI 168
Query: 487 NKMDSTE 507
NK D E
Sbjct: 169 NKADLVE 175
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 44 KTHINIVVIGHVDSGKSTTT 103
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +1
Query: 265 KFETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 444
++ET+K + I PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 445 LAFTLGV--KQLIVGVNKMD 498
LA +GV ++V +NK+D
Sbjct: 159 LARQVGVPLDNIVVFMNKVD 178
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 38 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 208
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 209 LDKLKAER 232
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +1
Query: 265 KFETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 444
++ET+K + I PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 445 LAFTLGV--KQLIVGVNKMD 498
LA +GV ++V +NK+D
Sbjct: 160 LARQVGVPLDNIVVFMNKVD 179
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 38 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 208
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 209 LDKLKAER 232
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +1
Query: 265 KFETSKYYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 444
++ET+K + I PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 445 LAFTLGV--KQLIVGVNKMD 498
LA +GV ++V +NK+D
Sbjct: 160 LARQVGVPLDNIVVFMNKVD 179
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 38 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 208
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 209 LDKLKAER 232
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 39.1 bits (87), Expect = 0.003
Identities = 30/107 (28%), Positives = 48/107 (44%)
Frame = +1
Query: 289 VTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 468
+ +I PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 469 QLIVGVNKMDSTEHHTVSPD*GIRRKYPHTQKIGTTSVXFRAILXDG 609
++I+ +NK D E +S RK + + S L DG
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRKGLKSMGVDENSPIVEMSLADG 173
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 53 INIVVIGHVDSGKSTTT 103
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 37.1 bits (82), Expect = 0.013
Identities = 27/70 (38%), Positives = 32/70 (45%)
Frame = +1
Query: 289 VTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 468
VT + PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 469 QLIVGVNKMD 498
QL+V VNK+D
Sbjct: 258 QLVVAVNKID 267
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 35.9 bits (79), Expect = 0.030
Identities = 27/65 (41%), Positives = 33/65 (50%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 236 LGITI 250
GIT+
Sbjct: 74 RGITV 78
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
NI + H+DSGK+T T ++Y G ID + +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----------SMHEVRGKDDVGATMDFMDLERQ 95
Query: 236 LGITI 250
GITI
Sbjct: 96 RGITI 100
Score = 28.3 bits (60), Expect = 6.1
Identities = 26/89 (29%), Positives = 35/89 (39%)
Frame = +1
Query: 289 VTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 468
+ II PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 469 QLIVGVNKMDSTEHHTVSPD*GIRRKYPH 555
I VNKMD + G+R K H
Sbjct: 166 PFICFVNKMDRNGATPLKALDGLRNKLNH 194
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 33.1 bits (72), Expect = 0.21
Identities = 34/123 (27%), Positives = 55/123 (44%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 236 LGITIDMLSGSSKLASTMLPSXMLLDTEISSRT*SQEPLRLIALCSS*LPVPVNSKLVSL 415
GIT+ + + + +L L+DT S E R +A+C L + ++ V
Sbjct: 86 RGITVKAQTAALRHRGYLL---NLIDTP-GHVDFSAEVSRSLAVCDGILLLVAANQGVQA 141
Query: 416 RTV 424
+T+
Sbjct: 142 QTI 144
Score = 31.9 bits (69), Expect = 0.50
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +1
Query: 283 YYVTIIXAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 462
Y + +I PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 463 VKQLIVGVNKMD 498
+ Q+I +NK+D
Sbjct: 155 I-QIIPVINKID 165
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 32 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 127
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 32 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 127
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 8 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 118
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 8 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 118
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 491 LLTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 363
L PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 134 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 134 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 53 INIVVIGHVDSGKSTTT 103
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 56 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 235
+I+ GH+D S GH +K GI E FE E ++ + + + ERE
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATSTSYERE 1691
Query: 236 LGI 244
L +
Sbjct: 1692 LAM 1694
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -1
Query: 474 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 316
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 315 VSRSXNDGNI 286
S S +D I
Sbjct: 84 FSGSKSDAEI 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,617,377
Number of Sequences: 27780
Number of extensions: 306902
Number of successful extensions: 915
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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