Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0437
         (426 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   3.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   3.8  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   3.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   6.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   8.7  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 362 QRDRYTCQRPSARXFRXLPFLSRHVRRLSPSSSKSG 255
           ++D  T   P A   R       H+RRL  S  KSG
Sbjct: 123 EKDMETTLTPCASPNRKPDDNQDHLRRLEMSLEKSG 158


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -2

Query: 278 SPSSSKSGAP 249
           SPSS+KSG+P
Sbjct: 74  SPSSTKSGSP 83


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +1

Query: 124 TWTPTSKGEKPSIRAMAHYVNHHPN 198
           TW     G + ++  M  +VN  P+
Sbjct: 271 TWNVVFNGSRKNLDVMKSFVNFRPS 295


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 136 TSKGEKPSIRAMAHYVNHHPNQVFWGRGAVKH*IGTL 246
           TSK +K   + + +Y N    +V  G+   +H I  L
Sbjct: 79  TSKKDKDGYKVVCYYTNWSQYRVKIGKFTPEHIIPDL 115


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 138 RWSPRSLIVDSCSKLEQHSTLSRSILLIYKGF 43
           R +P +++   C+KL   S    +   + KGF
Sbjct: 33  RGTPLAMLAAQCNKLSNKSPPPLADAAVGKGF 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,367
Number of Sequences: 336
Number of extensions: 1426
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9490410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)